Ppal013800.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex pallidus
Gene Symbol
TFIP11
Assembly
GCA_014825455.1
Location
QVNV01009326.1:1441-4365[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.31 3.4e+03 -2.4 0.0 198 238 211 247 203 257 0.72
2 3 4.5e-99 4.9e-95 318.5 19.2 1 275 376 644 376 644 0.99
3 3 0.025 2.8e+02 1.2 0.1 245 268 659 682 653 683 0.82

Sequence Information

Coding Sequence
ATGTCCAAAGACGAAATGGAAACCCGTCGACATAACCTTTCTAAGAAACAACAAATGCTAGGAATAGGGGCTGATGATAGCGACGAAGATGATCTATCTGCAAGACCATCCTTTAAAAATTATAACAAAGGTCCAAAGAATTATACAGCACCAGTTAATTTTGTTGCTGGTGGTATTCAACAAGCAGGTAAACCAAAGAAAGAAGATGAGGAAGATGAAGACGAAAGAAAAGAAGAAGAAGAAGAAGCAGGAGAATCCCAAACAAAATATCAAAGTAATTCAAGTTCAGAAGATGAAAAGCCAAATAGTTCATCACGACCATCTTTCTCTTTAAATTTAGACAGCGATATCGCAGGTCTACGCAAAAAACGTAATAAAGTTAATCAGCAATTGATGAAAAAAGGCATGGGGAGTTGGGAGATTCATACAAAGGGTATTGGTGCAAAACTGTTATTACAGATGGGTTTTGAACCTGGTAAAGGTTTAGGTAAACAATTGCAAGGAATGAGTACACCAGTGCAAGCACATCTAAGAAAAGGAAGAGGTGCAATTGGTGCATATGGTCCAGAAAAAATACCTAAACTTTTAGAGAAGAAAGAAAGTAACGAAGTGGAAGAAACATCAGAATCTAAATCCAAATTATCACAATGGAGGAAGAGTGACAGTAATAAGAAAACAGTTAGATACATTTATAGAAGTGTGGATCAAGTTTTGGAAGATGGAAAAGTAAAGCCTAAACGAAAACTTCCAGTTTCTAGTGATATGAGCAAAGTCAAAGTTATTGATATGACAGGACCGGAACAGAGAATTCTTAGTGGATATCATGCGATATCTGGTGTTCAGCAGTGTTCAGATGAGACTGCGATCACATCTGATAAAGAATCTAAAGTAAATTTTGCTCTGCCCGAATTACAACATAATTTAAATTTACTCGTGGATATGTGCGAACAAGATATTATTCAAAACGACCGACTGATAAGACATTTAAATGATAGAAAGATTGCTTTAGAAGCAGAAAAAAAGAATCTATTTAAAGTTCTCGATCACCACAGTCAACAAATTGAGACTTTAGAGAACATGCTTACGCTTGTGAATAAATTACTGAACACAACAGATAAACTGTCTTTACAAGAGATTGCCGAGGTGTTTAAGCAATTGCAAGAACATTATTACGAAGAGTACAGAATATATGAACTTAGTGAATTGGCAAGCAGTTTTGTAGCACCAAAACTAAAAGATTATTTGCTCAGTTGGAATTCATTAATGCAACCAAAAGAACCGATTAAGTTATTTTTAACCTGGAAGGATGTTTTAGAGAAAGGAACTAGTACAACTGTTCAAATACAAACTATGCAGCCATACGATCAGGTAGTATGGAGTGCGTGGATGCCATCAGTTAGAGGAGCTATAAAGCAATGGACGTGCAGACAACCTGATCCTCTGATCGAATTACTAGAACACTGGGTACCATTGTTGCCTACTTGGATTTTAGAAAATATACTAGATATATTAATTTTACCGAAATTGACATTAGAAGTAGAGGAATGGAATCCTCTTACCGATACTGTACCTATTCATACGTGGATTCATCCTTGGTTGCCGTTATTACGAAATCGTTTGGATACCTTAATTTATCCAATAATACGCAGAAAACTTGGATCTGCATTAGGAGGCTGGCATCCATCAGACAGATCCGCTAGATTAATGCTTCAACCGTGGGCGGAGGTATTTACCAAAGGGGACATGGAAGCATTTTTAGTCAAGAATATTCTTCCTAAATTACAAATAGCATTATCCGAGTTTGTTATAAATCCGCGCGAGCAACACTTGGATCAATGGAATTGGGTTTACGAGTGGAAAGAATTGATTCCTGTTCATATGATGGCAGGTCTACTTGACAAATTCTTTTTCCCAAAGTGGTTACAAGTTTTGGCACTTTGGTTGAATCATTTACCTAATTACGATCAAGTTACAACCTGGTACATGGACTGGAAAGGAATGCTAAGTGATAAGTTATTAGGAGAACCAATAATAAAAGGTATGTTCTTTAG
Protein Sequence
MSKDEMETRRHNLSKKQQMLGIGADDSDEDDLSARPSFKNYNKGPKNYTAPVNFVAGGIQQAGKPKKEDEEDEDERKEEEEEAGESQTKYQSNSSSEDEKPNSSSRPSFSLNLDSDIAGLRKKRNKVNQQLMKKGMGSWEIHTKGIGAKLLLQMGFEPGKGLGKQLQGMSTPVQAHLRKGRGAIGAYGPEKIPKLLEKKESNEVEETSESKSKLSQWRKSDSNKKTVRYIYRSVDQVLEDGKVKPKRKLPVSSDMSKVKVIDMTGPEQRILSGYHAISGVQQCSDETAITSDKESKVNFALPELQHNLNLLVDMCEQDIIQNDRLIRHLNDRKIALEAEKKNLFKVLDHHSQQIETLENMLTLVNKLLNTTDKLSLQEIAEVFKQLQEHYYEEYRIYELSELASSFVAPKLKDYLLSWNSLMQPKEPIKLFLTWKDVLEKGTSTTVQIQTMQPYDQVVWSAWMPSVRGAIKQWTCRQPDPLIELLEHWVPLLPTWILENILDILILPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFTKGDMEAFLVKNILPKLQIALSEFVINPREQHLDQWNWVYEWKELIPVHMMAGLLDKFFFPKWLQVLALWLNHLPNYDQVTTWYMDWKGMLSDKLLGEPIIKGMFF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00898736;
90% Identity
iTF_01266879;
80% Identity
-