Pmex035172.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polyergus mexicanus
Gene Symbol
tfip11
Assembly
GCA_030449975.1
Location
JAUDSZ010000023.1:3411096-3415039[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.4e-99 3.6e-95 320.0 17.0 1 275 391 660 391 660 0.98
2 2 0.00061 9.4 7.1 0.1 243 273 673 703 666 705 0.90

Sequence Information

Coding Sequence
atgtctgAAGACGAAGTAGAAAGCTTTGAAATTACCGATTATGATTTAGACAATGAATTTAACATTGGTCGTCCCCGACGCAAGCTTTCGAAGAAGCAACAAATGCTAGGAATATGGGCAGATGACAGCGATGAAGATGAATTATCTGCCAGACCATCTTTCAAGACTTTTAACAAGGGTCCTAAAAATTATACAGCGCCGGTCAATTTTGTTGCTGGTGGTATCCAACAAGCAGGGAAACCAAAAGATAAGGAAGATAATGATGACGAGGAAGATGAAGAAGAGACACGGGAATCTCAAACAAAGCATTACAGTGATTCTAGtTCAGAAGATGAAAGACCAAATAATTCGAAATCACGTCCATCTTTCTCTTTAAAGTTAGACAGCGATATCGCGGGTTTGCGTAAAAAACGCAATCAAGTAAAtccattattaataaaaggtGGAATGGGTAGTTGGGAAGTACATACAAAGGGTATTGGTGCTAAATTGTTATTACagatggGATTTGAACCTGGCAAAGGTTTGGGTAAACAGCTACAAGGAATAAGCACCCCAGTGGAAGCACATCTCCGAAAGGGAAGAGGTGCAATTGGTGCATATGGTCCAGAAAAGGTACCAAAAATtccagaaaaaaagaaagatgatgatggagaagaaacaAAAGAACTCAAGTCCAAAGTATCTCAATGGCGAAAGGGCGATaatagcaataaaaaaaaagttagatACTGTTATAGAAGTGTAGATCAAGTTTTGGAAGATGGAAAGTTGAAACCAAATAGAAAGCTCCCAATGTCTAATGATATAAGTAGAGTTAAAGTTATCGACATGACAGGGCCAGAACAGAGAATTCTTAGTGGGTATCACGCGATAGCTGGTGGTCAGCAATGTCCCGATGAGGCTGTGATTACATCTGATAAAAAATCTAAAGTGAATTTTGCTCTGCCTGAATTGCAACATAATTTAAGTTTACTCGTGGATATGTGCGAGCAAGATATTATACAAAACGATCGACGAATGAGGCATTTACATGACAGAGTAATCGCTTTAGAAGCGGAAAGAAAGAATTTATCGAAAGTCGTGGATCAACATGGCCAATCAATTGATACCTTAGAGAATGTGGTCGTGATTGTGAACAGGTTAATAAATGAAACGAATGAATTATCTCTGCAAGAAACTGCGGaagcttttaaaaatttgcaagaCAATTATTATGAAGAGTATAAAATGTATGAACTCGGTGAATTGACTAGTAGTTTTGTGGCgccaaaaataaaagattacttGCTCAGTTGGAATCCACTCTTGCAACCAAAACAACCAATCAAATTATTTGAACAGTGGAAGTGTATTTTGGAGAATGGAATTAGTAATACTACACTTCAGACACGGACTATGCACCCGTACGATCAATTAGTGTGGAATGCATGGATGCCATCAATTAGAGGAGCTATACAGCAGTGGACGTGTAGACAGCCTGATCCTCTGATTGAACTAATAGAACATTGGATACCATTATTGCCCAATTGGAtcttagaaaatattttagatgtATTAGTTTTGCCAAAATTGACATTGGAGGTGGAGGAATGGAATCCTCTTACAGACACTGTACCCATTCATACATGGATTCATCCTTGGTTGCCATTATTACGAAATCGTTTggataattcaatttatcCAATAATACGCAGAAAGCTTGGATCTGCATTAGGAAGTTGGCATCCATCGGATAGATCTGCTAGATTAATGCTGCAACCTTGGGCAGAAGTATTTACCAAGGGAGATATGGAAGCGTTTTTAGTCAAAAACATTGTTCCAAAATTGCGAACAGCCTTAACACAATTTGTCATATATCCACATCAACAACATATGGATCCATGGAATTCGGTGTACGAGTGGAAGGAATTGATTCCTGTTCATATCATGGCAAGCCTGCtcaacaaattcttttttccAAAGTGGTTGCAAACTTTGGCACTGTGGCTCGATCATTCGCCGAATTACGATCAAATTATAAACTGGTTTATGGGTTGGAAAAGCATGTTGAGCGATAAGTTACTGGCAGAACCAGTAATAAAAGaCTATTTCAATAAGGCATTGGACATGATAGAGAGAGCTGCCAACACGTCACAAAATCATCAACCTGGTGTGCTGGaacatatatcatatttaacgAATCTAGAGAGAACTCAGCCGACAATGTCGTCAATGCCATCAATCGCGCAGCCGAGGATGGAgagATTCGTAGAGGCAGGGCAAACAATGGCACCaaattcgaaaaatttcaaagatattGTACAAGAGAAATGTGAAAAGAGgggtatattatttatgaaaatccCAAATAGATATAAAGAAGGCAAGCAAGTATACAAAGTGGGCAACATTCAGGCGTATGTCGACGGTAATTTATTGTTTGTTTGTCATAATGGTACAAATTGGATACCGACGCCTTTAAATGCCTTGCTAGATATGTCCGAAGGATAA
Protein Sequence
MSEDEVESFEITDYDLDNEFNIGRPRRKLSKKQQMLGIWADDSDEDELSARPSFKTFNKGPKNYTAPVNFVAGGIQQAGKPKDKEDNDDEEDEEETRESQTKHYSDSSSEDERPNNSKSRPSFSLKLDSDIAGLRKKRNQVNPLLIKGGMGSWEVHTKGIGAKLLLQMGFEPGKGLGKQLQGISTPVEAHLRKGRGAIGAYGPEKVPKIPEKKKDDDGEETKELKSKVSQWRKGDNSNKKKVRYCYRSVDQVLEDGKLKPNRKLPMSNDISRVKVIDMTGPEQRILSGYHAIAGGQQCPDEAVITSDKKSKVNFALPELQHNLSLLVDMCEQDIIQNDRRMRHLHDRVIALEAERKNLSKVVDQHGQSIDTLENVVVIVNRLINETNELSLQETAEAFKNLQDNYYEEYKMYELGELTSSFVAPKIKDYLLSWNPLLQPKQPIKLFEQWKCILENGISNTTLQTRTMHPYDQLVWNAWMPSIRGAIQQWTCRQPDPLIELIEHWIPLLPNWILENILDVLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDNSIYPIIRRKLGSALGSWHPSDRSARLMLQPWAEVFTKGDMEAFLVKNIVPKLRTALTQFVIYPHQQHMDPWNSVYEWKELIPVHIMASLLNKFFFPKWLQTLALWLDHSPNYDQIINWFMGWKSMLSDKLLAEPVIKDYFNKALDMIERAANTSQNHQPGVLEHISYLTNLERTQPTMSSMPSIAQPRMERFVEAGQTMAPNSKNFKDIVQEKCEKRGILFMKIPNRYKEGKQVYKVGNIQAYVDGNLLFVCHNGTNWIPTPLNALLDMSEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00898736;
90% Identity
iTF_00280600;
80% Identity
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