Tsim020935.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetramorium simillimum
Gene Symbol
tfip11
Assembly
GCA_011636635.1
Location
VBVQ01000365.1:54968-59123[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.3e-102 4.4e-98 328.8 17.8 1 275 387 655 387 655 0.98
2 2 0.011 1.5e+02 2.4 0.1 245 272 670 697 661 700 0.85

Sequence Information

Coding Sequence
ATGTCTGAGGACGAAGTGGAGAGTTTCGAAATCACCGATTATGATTTAgacaatgaatttaatatagcCCGTCCCCGTCGAAAACTCTCAAAGAAAGAACAAATGTTAGgaATATGGGCTGACGATAGTGATGAGGAATTATCTGCCAGACCATCTTTCAAGACCTTTAACAAGGGCCCTAAAAATTACACGGCGCCAGTTAATTTTGTCGCTGGTGGTATTCAACAAGCGGGAAAAccgaaagagaaggaagacaAAGATGAcgaagaagatgaagaagagaTGCGGGAAACAAAGTATAGTAGTTCAAGttCAGAAGATGAGAGACCAAATAGTTTCAAATCACGTCCATCTTTCTCCTTGAATTTGGATAGCGACATTGCAGGTCTGCGTAAAAAGCGCAATCAAGTAAATCCATTGTTGATAAAAACCGGAATGGGTAGTTGGGAAGCACATACGAAGGGGATAGGCGCTAAATTATTGTTGCAGaTGGGATTTGAACCTGGTAAAGGTTTAGGTAAACAATTACAAGGAATAAGTGCTCCAGTGGAAGCGCATCTCAGAAAAGGAAGAGGCGCGATTGGCGCGTATGGACCTGAAAAAACACCGAAAATTcccgagaaaaagaaggaagatgATGGAGAGGAAGTAAGGGAATCCAAGTCTAAGGTATCTCAATGGCGGAAGGGTGATAACAGCAACAAGAAAAAAGTCAGATACTCTTATAGAAGTGTAGATCAAGTTTTGGAAGATGGAAAACTGAAGCCTAATAGAAAACTACCAGTGTCTAGCGATATGACTAGAGTTAAAGTTATTGATATGACCGGGCCGGAACAAAGAATTCTTAGTGGATATCACGCGATAGCTGGCGGTCAGCAGTGTCCTGACGAAACTGGAATTACATCCGACAAGAAATCGAAAGTGAACTTTGCCCTGCCCGAATTGcagcataatttaaatttactcgTGGATATGTGCGAGCAAGATATTATTCAAAACGATCGGCGAATGAGGCATTTAAATGATAGAACGATTGCTTTAGaagcagaaaaaaagaatttatccaAAGTTGTAGATCAACACAGTCAATTGATTGATACCTTGGAGAATGTACTTGTGATCGTGGATAGGTTGATGAATGAGACGAAGGAGTTGTCGCTGCAAGAAACCGCGGAAgctttcaaaaatttgcaaGACAATTATTATGAAGAGTACAAGATGTACGAGCTTGGTGAATTAGCTAGCAGTTTTGTAGcaccaaaaataaaagattgccTGCTAAATTGGAATCCATTGATGCAACCAAAACagccaattaaattatttgaacagTGGAAGAGTATCTTGGAGAATGGAGCTAGTACAACTCTTCAGACACGAACTATGCATTCATATGATCAATTAGTATGGAATGCTTGGATGCCATCAATTAGAGGAGCCATACAACAGTGGACATGTAGGCAACCTGAGcctttaattgaattaattgagTACTGGATGCCATTATTACCTAATTGGATCctggaaaatatattagatttattagtGTTACCAAAATTGACATTGGAGGTGGAAGAATGGAATCCTCTTACCGATACTGTACCTATCCATACATGGATTCATCCTTGGTTGCCATTActacGAAATCGTTTAGATACTTTGATTTATCCAATAATACGTAGAAAACTTGGATCTGCATTAGGAGGTTGGCATCCATCAGACAGATCAGCAAGGTTAATGTTGCAACCTTGGGCAGAAGTGTTTGCCAAGGGAGACATGGAAGCGTTTTTAGTCAAGAACATTATCCCAAAATTGCAAATAGCCTTATCCGAGTTTGTTATAAATCCACATCAACAGCACCTAGATCAATGGAACTGGGTGTATGAATGGAAGGAATTAATCCCTATTCATATCATGACAGGATTGcttgataaattctttttcccaAAATGGCTACAAGTCTTAGCGCTTTGGCTTAATCATTCGCCTAATTATGATCAAGTTACAACATGGTACATGGGTTGGAAAGGGATGTTGAGCGAGAAGTTACTAGCTGAACCAGTAATAAAAGAACACTTCAAGAAAGCATTGGACATGATGAACAGGGCCGTCAGTGGACTACAAAATCATCAACCTGGCGCACTAGAACAGGTTTCGTATTTAACAAGCTTGGAGAGAACTCAACCGACAATGTCTCAAATAGCACCGATTGCGCAGCCGAGAATGGAGAGATTTGCAGAAGCAGTACGAACAGTCTCGCAAATTCCGCAAGGTTTTAAGGATTtcgtacaaaaaaaatgtgaagagagaggtatattatttatgccaATTCCGAACAGATATAAGGAGGCTAAGCAAGTATATAAAGTAGGCAATGTTCAGGCGTACATTGACAGTAATGTATTATTCGTATGTCATAATGGTACAAATTGGATACCGACACATATAAATGCTTTGCTGGATATGTCtgaactttaa
Protein Sequence
MSEDEVESFEITDYDLDNEFNIARPRRKLSKKEQMLGIWADDSDEELSARPSFKTFNKGPKNYTAPVNFVAGGIQQAGKPKEKEDKDDEEDEEEMRETKYSSSSSEDERPNSFKSRPSFSLNLDSDIAGLRKKRNQVNPLLIKTGMGSWEAHTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHLRKGRGAIGAYGPEKTPKIPEKKKEDDGEEVRESKSKVSQWRKGDNSNKKKVRYSYRSVDQVLEDGKLKPNRKLPVSSDMTRVKVIDMTGPEQRILSGYHAIAGGQQCPDETGITSDKKSKVNFALPELQHNLNLLVDMCEQDIIQNDRRMRHLNDRTIALEAEKKNLSKVVDQHSQLIDTLENVLVIVDRLMNETKELSLQETAEAFKNLQDNYYEEYKMYELGELASSFVAPKIKDCLLNWNPLMQPKQPIKLFEQWKSILENGASTTLQTRTMHSYDQLVWNAWMPSIRGAIQQWTCRQPEPLIELIEYWMPLLPNWILENILDLLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHLDQWNWVYEWKELIPIHIMTGLLDKFFFPKWLQVLALWLNHSPNYDQVTTWYMGWKGMLSEKLLAEPVIKEHFKKALDMMNRAVSGLQNHQPGALEQVSYLTSLERTQPTMSQIAPIAQPRMERFAEAVRTVSQIPQGFKDFVQKKCEERGILFMPIPNRYKEAKQVYKVGNVQAYIDSNVLFVCHNGTNWIPTHINALLDMSEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00898736;
90% Identity
iTF_01421552;
80% Identity
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