Pgra009158.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex gracilis
Gene Symbol
tfip11
Assembly
GCA_002006095.1
Location
NW:4863-10350[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.44 2.4e+03 -2.9 0.1 199 237 226 260 216 269 0.66
2 3 7.9e-100 4.3e-96 321.0 18.1 1 275 390 658 390 658 0.99
3 3 0.011 61 2.3 0.1 245 272 673 700 664 703 0.85

Sequence Information

Coding Sequence
atgtCCGAAGATGAAATGGAAAGCTTTGAGATTACTGACTATGATTTAGAACATGAATTTAACCCAGCCCGTCCTCGACATAAACTTTCTAAGAGACAACAAATGCTAGGAATATGGGCTGATGATAGCGACGAAGACGATCTATCTGCAAGACCATCCTTTAAAACTTATAACAAAGGTCCAAAGAATTATACAACACCAGTTAATTTTGTTGCTGGTGGTATTCAACAAGCAGGTAAAccaaaagaagaagataaggatgaagaagaaaaagacgaagaagaagaggcaGGAGAATCCCAAACAAAGTATCAAAGTAATTCAAGttcAGAAGATGAAAAGCCAAATAGTTCGTCACGAccatctttctctctaaatTTAGACAGCGATATCGCAGGGTTACGCAAAAAACGTAATCAAATTAATCCACTATTGATGAAAAGTGGCATGGGAAGTTGGGAAGTTCATACAAAGGGTATTGGTGCAAAACTGTTATTACAgATGGGTTTTGAACCTGGTAAAGGTTTAGGTAAACAATTGCAAGGAATAAGTACGCCGGTGCAAGCACATCTCAGAAAGGGAAGAGGTGCAATTGGTGCATATGGTCCAGAAAAAATACCAAAACttgtagagaaaaaagaaagtaacgAAATGGAAGAAACATCAGAATCTAAATCCAAATTGTCACAATGGAGAAAAAGtgatagtaataaaaaaaaagttaaacacATTTATAGAAGTGTGGATCAAGTTTTGGAAGATGGAAAAGTAAAGCCTAATAGAAAACTTCCAGTTTCTAGTGATATGAGCAAAGTCAAGGTTATTGATATGACAGGGCCAGAACAGAGAATTCTTAGTGGATATCATGCGATATCTGGTGCTCAGCAGTGTCCAGATGACACTGTGATCACATCTGATAAAGAATCTAAAGTAAACTTTGCTCTGCCCGAATTACAACATAATTTAAAGTTACTCGTGGATATGTGCGAACAAGATATTATTCAAAACGACCGACTGATAAGACATTTAAATGATAGAAAGATTGCTTTagaagcagaaaaaaagaatctatttAAAGTTCTCGATCACCACAGTCAACAAATTGAGACTTTGGAGAACATGCTTACGATTGTGGATAAATTACTGAACACAACAAATGAACTGTCTTTACAAGAGATTGCTGAGGCGTTCAAGCAGttacaagaaaattattaCGAAGAGTACAGATTATACGAACTTGGAGAATTGGCAAGCAGTTTTGTAGCACCGAAACTAAAAGATTATTTGCTTAGTTGGAATCCGTTAATGCAACCAAAAGAACCGATTAAGTTATTCGTAACCTGGAAAGATGTTTTAGAGAAAGGAACTAGTACGACTCTTCAAATACAAACTATGCAACCATACGATCAAGTAGTATGGAGCGCGTGGATGCCATCAATTAGAGGAGCCATACAGCAATGGACGTGTAGACAACCCGATCCTCTGATCGAATTACTGGAACACTGGGTATCATTGTTGCCTACTTggattttagaaaatatactAGATCTATTAATCTTACCAAAATTGACATTAGAAGTAGAAGAATGGAATCCTCTTACCGATACTGTACCTATTCACACGTGGATTCATCCTTGGTTGCCGTTATTACGAAATCGTTTGGATACCTTAATTTATCCAATAATACGCAGAAAACTTGGATCTGCATTAGGAGGCTGGCATCCATCAGACAGATCCGCTAGATTAATGCTTCAACCCTGGGCGGAGGTATTTACCAAAGGGGACATGGAAGCATTTCTAGTCAAGAATATTCTTCCTAAATTACAAATAGCATTATCCGAGTTTGTTATAAATCCGCACGAGCAACACTTAGATCAATGGAATTGGGTTTACGAGTGGAAAGAATTGATTCCTGTTCACATAATGGCAGGTCTACTTGACAAATTCTTTTTCCCAAAGTGGTTACAAGTCTTGGCACTTTGGTTAAATCATTCACCTAATTACGATCAAGTTACAACCTGGTACATGGGCTGGAAAGGAATGCTAAGCGATAAGTTATTAGGAGAACCAATAATAAAAGaacatTTCAAGAAAGCATTAGATATGATGAATAGGGCTGTCAGCGGATCACAAAATCATCAACCTGGCGCACTGGAACAAGTTTCGTATCTGACGAGCTTAGAGAGAACTCAGCCAACAATGCCGCAAATAACACCTATAGCACAACCGAGAATGGAGAGACTCGCAGAAGCAGTACGAACAGCCTCACAAATCCCACAAGGTTTCAAGGATCTTGTACAAAAGAAATGCGAGGAGAGGGGTATATTATTCATGCCGATCTTGAACAGATACAAGGAAGGCAAGCAAGTATATAAAGTAGGCAATGTTCAGGCATACATTGATGGAAACGTCGTGTTTGTATGTCACAATGGTACAAATTGGATGCCAACACATTTAAATGCTTTGCTCGATATGTCCGAACTTTGA
Protein Sequence
MSEDEMESFEITDYDLEHEFNPARPRHKLSKRQQMLGIWADDSDEDDLSARPSFKTYNKGPKNYTTPVNFVAGGIQQAGKPKEEDKDEEEKDEEEEAGESQTKYQSNSSSEDEKPNSSSRPSFSLNLDSDIAGLRKKRNQINPLLMKSGMGSWEVHTKGIGAKLLLQMGFEPGKGLGKQLQGISTPVQAHLRKGRGAIGAYGPEKIPKLVEKKESNEMEETSESKSKLSQWRKSDSNKKKVKHIYRSVDQVLEDGKVKPNRKLPVSSDMSKVKVIDMTGPEQRILSGYHAISGAQQCPDDTVITSDKESKVNFALPELQHNLKLLVDMCEQDIIQNDRLIRHLNDRKIALEAEKKNLFKVLDHHSQQIETLENMLTIVDKLLNTTNELSLQEIAEAFKQLQENYYEEYRLYELGELASSFVAPKLKDYLLSWNPLMQPKEPIKLFVTWKDVLEKGTSTTLQIQTMQPYDQVVWSAWMPSIRGAIQQWTCRQPDPLIELLEHWVSLLPTWILENILDLLILPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFTKGDMEAFLVKNILPKLQIALSEFVINPHEQHLDQWNWVYEWKELIPVHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTTWYMGWKGMLSDKLLGEPIIKEHFKKALDMMNRAVSGSQNHQPGALEQVSYLTSLERTQPTMPQITPIAQPRMERLAEAVRTASQIPQGFKDLVQKKCEERGILFMPILNRYKEGKQVYKVGNVQAYIDGNVVFVCHNGTNWMPTHLNALLDMSEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00898736;
90% Identity
iTF_01266879;
80% Identity
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