Avir025140.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agapostemon virescens
Gene Symbol
TFIP11
Assembly
GCA_028453745.1
Location
CM052084.1:1297292-1302364[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.8e-101 4.2e-97 325.8 15.5 1 275 394 661 394 661 0.99
2 2 0.0029 44 4.3 0.1 244 273 675 704 666 706 0.88

Sequence Information

Coding Sequence
ATGTCTGAAGACGAAGTAGAAAGTTTTGAAATCACAGACTATGATCTTGAAAATGAATTTAACATTAATCGTCCTAGACGAAAATTAACCAAAAAGCAACAAATGCTTGGTATTTGGGCAGATGATAGCGATGAAGAAGAATTATCTGCCAGACCATCATTCAGAACTTTTGATAAAGGACCAAAGAATTATACTGCTCCTGTTAGTTTTGTAGCGGGTGGTATTCAACAAGCAGGCAAACCAAAAGAGGAAAAGGAGGAAAAAGATGAAGATGACAGTGATAATGAAAATGCTAGTAAATCTCAAAGGGAATACCCAAATAGTTCAAGTTCTGAAGACGAAAGACCAAGCATGGCACCATTACGTGCATCCTTTTCTATGAATACGGATGGTGACATTGCTGGTTTACGTGGAAAGAAACATAAAGTAAACCCGTTGCTTATGCAAACTGGAATGGGTAGTTGGGAAGTCCATACGAAAGGTATTGGAGCAAAATTACTATTACAGATGGGTTTTGAACCTGGCAAAGGGTTGGGTAAACAACTGCAAGGTATAAGTGCCCCAGTAGAAGCACATTTGAGGAAAGGTAGAGGTGCCATTGGTGCTTATGGTCCAGAAAAATGCCCAAAATTGCCAGATAAAAAGAAGGAAGAAGATGCAGAGGAGGGGAAAGATTCTAAAGGCAAATTGTCGCAATGGCGAAAAGGAGACAGTAATGCAACAAAAAAGAAAGTAAAATATGTCTACCGAAGTGTAGATCAAGTATTAGAAGATGGAAAATTAAAACCTAATAAGAAAGTGAGGGTATCGAATGAAATTAGTAGAGTTAAGGTTATAGATATGACTGGTCCTGAACAGAGAATTCTCAGTGGTTACCATGCAATTGCTGGAGGTCAACAGAGACCTGATGAAAATGTTGTGATTACTGATAAAAAATCCAAAGTTAATTTTGCGTTACCAGAACTTCAGCATAATTTAAATATACTTTTAGATATGTGCGAACAAGATATTATACAGAACGATAGACGAACAAGGCATTTGAGTGATAGAGTGGTTGCTTTAGAAGCAGAGAAGAAGAATATATCTAAAGTTATAGATCATCATGGTCAACTTATCGATACATTAGAAAATGTGTTAGAAATTGTAGATAAGTTAATGGATGAAACGAATCAATTAACATTACAAGAAACTGCTGAATCCTTCAAAGATTTACAAGACAAATACTATGAAGAATATAAAATGTACGAGCTTGGTGAATTGGCCAGTAGTTTTGTTGGTCCGAAGATAAAAGATTGTTTAGCCAGTTGGAATCCAACTATGCAACCAAAGCAACCTATCAAATTGTTTGAACAATGGAAGTGTATTTTAGAAAGCGGTACCACAACGCTACAATCGAGAACTATGCATCCATATGATCAACTTGTTTGGAACGCGTGGATGCCATCAATTAGAGGAGCCATTCAACAGTGGGCTTGTAGACAGCCGGATCCTCTTATCGAGTTAATAGAAATATGGATGCCATTACTTCCAGGTTGGATATTGGAAAATATTTTGGATTTATTGATACTTCCAAAGCTTACTTTGGAAGTGGAAGAATGGAATCCTCTTACAGATACTGTACCTATTCACACATGGATTCATCCTTGGTTACCACTATTACGAAATCGTTTGGATACTTTAATATATCCAATAATACGTCGCAAACTAGGTTCTGCATTAGGTGGTTGGCATCCATCTGACAGATCTGCCAGGTTAATGTTACAACCATGGTCCAACGTCTTTGCAAAAGGAGATATGGAAGCCTTCTTAGTAAAAAACATAATCCCAAAATTACAAATAGCACTCTCAGAATTTGTCATAAACCCACATCAGCAGCATTTAGATCAGTGGAACTGGGTTTACGAATGGAAAGAATTGATTCCAACTCACATAATGGCAAGTCTGCTCGACAAATTCTTCTTCCCCAAATGGTTACAAGTTTTAGCATTGTGGTTGAATCATTCCCCCAACTATGATCAAGTTACGAACTGGTATATGGGATGGAAAGGAATGCTCAGTGAGAAATTACTCTCCGAACCTCTAGTGAAAGAGCATTTCAAGAAAGCATTGGACATGATGAATAGAGCAGTCAGTGGTCCACAAAGTCACCAACCAGGAGCAATGGAACAAGTTTCTTATCTGACAAGCTTGGAAAGGACTCAGCCAACTATGTCACAGATGCCCGCAAATGCTCAGCCAAGGATGGAGAGGCTCGCAGAGGCAGTGAGAACAGCTTCGCAAATTCCTCAAGGTTTCAAGGACCTCGTGCAAAAGAAGTGCGAGGAAAGAGGCATCCTGTTCATGCCAATACCAAATCGCTATAGGGAAGCAAAACAAGTTTACAAAGTGGGCAACGTGCAAGCTTACATAGACGGCAACGTCCTATTCGTGTGTCACAACGGCATGAATTGGCTGCCAACGCATTTAAATGCATTGTTAGACATGTCAGAACTTTAG
Protein Sequence
MSEDEVESFEITDYDLENEFNINRPRRKLTKKQQMLGIWADDSDEEELSARPSFRTFDKGPKNYTAPVSFVAGGIQQAGKPKEEKEEKDEDDSDNENASKSQREYPNSSSSEDERPSMAPLRASFSMNTDGDIAGLRGKKHKVNPLLMQTGMGSWEVHTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHLRKGRGAIGAYGPEKCPKLPDKKKEEDAEEGKDSKGKLSQWRKGDSNATKKKVKYVYRSVDQVLEDGKLKPNKKVRVSNEISRVKVIDMTGPEQRILSGYHAIAGGQQRPDENVVITDKKSKVNFALPELQHNLNILLDMCEQDIIQNDRRTRHLSDRVVALEAEKKNISKVIDHHGQLIDTLENVLEIVDKLMDETNQLTLQETAESFKDLQDKYYEEYKMYELGELASSFVGPKIKDCLASWNPTMQPKQPIKLFEQWKCILESGTTTLQSRTMHPYDQLVWNAWMPSIRGAIQQWACRQPDPLIELIEIWMPLLPGWILENILDLLILPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWSNVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHLDQWNWVYEWKELIPTHIMASLLDKFFFPKWLQVLALWLNHSPNYDQVTNWYMGWKGMLSEKLLSEPLVKEHFKKALDMMNRAVSGPQSHQPGAMEQVSYLTSLERTQPTMSQMPANAQPRMERLAEAVRTASQIPQGFKDLVQKKCEERGILFMPIPNRYREAKQVYKVGNVQAYIDGNVLFVCHNGMNWLPTHLNALLDMSEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00898736;
90% Identity
iTF_00966025;
80% Identity
-