Tbic008364.1
Basic Information
- Insect
- Tetramorium bicarinatum
- Gene Symbol
- tfip11
- Assembly
- GCA_011636605.1
- Location
- VBVP01010070.1:268-4413[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-102 2.8e-98 329.4 19.4 1 275 384 652 384 652 0.98 2 2 0.006 81 3.2 0.1 245 272 667 694 658 697 0.85
Sequence Information
- Coding Sequence
- ATGTCTGAGGACGAAGTGGAGAGTTTCGAAATCACCGATTATGATTTAgacaatgaatttaatatagcCCGTCCCCGTCGAAAACTCTCAAAGAAAGAACAAATGTTAGgAATATGGGCTGACGATAGTGATGAGGAATTATCTGCCAGACCATCTTTCAAGACCTTTAACAAGGGCCCTAAGAATTACACGGCGCCAGTTAATTTCGTCGCTGGTGGTATCCAACAAGCAGGAAAAccgaaagagaaggaagacaAAGATGACGAAGAAGAGACGCGGGAGACAAAGTATAGTAGTTCAAGttCAGAAGATGAGAGACCAAATAGTTCCAAATCACGTCCGTCCTTCTCCTTGAATTTGGATAGCGACATCGCCGGTCTGCGTAAAAAGCGCAATCAAATAAATCCATTGTTGATGAAAAGCGGAATGGGTAGTTGGGAAGTACATACGAAGGGAATTGGCgctaaattattgttacagatggGATTTGAACCTGGTAAAGGTTTAGGTAAACAATTACAAGGAATAAGCGCTCCAGTGGAAGCACATCTCAGAAAAGGAAGAGGCGCGATTGGCGCGTATGGTCCTGAAAAGACACCAAAAATTCccgagaaaaagaaggaagatgATGGGGAGGAAGTAAGGGAATCCAAGTCTAAGGTATCTCAATGGCGGAAGGGTGATAACAGCAACAAAAAAAAGGTCAGATACTCTTATAGAAGTGTAGATCAAGTTTTGGAAGATGGAAAACTGAAGCCTAATAGAAAACTACCAGTATCTAGTGATATGGCTAGAGTTAAAGTTATTGATATGACTGGACCAGAACAAAGAATTCTTAGTGGATATCACGCGATAGCTGGCGGTCAGCAGTGTCCTGACGAGACTGGAATTACATCCGACAAGAAATCGAAAGTGAACTTTGCTCTTCCCGAATTGcagcataatttaaatttactcgTGGATATGTGCGAGCAAGATATTATTCAAAACGATCGACGAATGAGACATTTAAACGATAGAGCGATTGCTTTAGaagcagaaaaaaagaatttatccaAAATTGTGGATCAGCACAGTCAATTGATTGATACCTTGGAGAATGTACTTGTGATCGTGGATAGGTTGATGAATGAGACGAAGGAGTTGTCGTTGCAAGAAACCGCGGAAgctttcaaaaatttgcaaGACAATTATTATGAAGAGTACAAGATGTACGAGCTTGGTGAATTAGCTAGCAGTTTTGTAGcaccaaaaataaaagattgccTGCTGAATTGGAATCCATTGATGCAACCAAAacagcaaattaaattatttgaacagTGGAAGAGTATCTTGGAAAATGAAGCTAGTACAACTCTTCAGACACGGACTATGCATTCATATGATCAATTAGTATGGAATGCTTGGATGCCATCAATTAGAGGAGCCATACAACAGTGGACATGTAGGCAACCTGAGcctttaattgaattaattgagTACTGGATGCCATTATTACCTAATTGGATCctggaaaatatattagatttattagtGTTACCAAAATTGACATTGGAGGTGGAAGAATGGAATCCTCTTACCGATACTGTACCTATCCATACATGGATTCATCCTTGGTTGCCGTTActacGAAATCGTTtagatactttaatttatcCAATAATACGTAGAAAACTTGGATCTGCATTAGGAGGTTGGCATCCCTCAGACAGATCTGCCAGATTAATGTTGCAACCTTGGGCAGAAGTGTTCGCCAAGGGAGACATGGAAGCGTTTTTAGTCAAGAACATTATTCCAAAATTGCAAACAGCCTTATCCGAGTTTGTTATAAATCCACATCAACAGCACCTAGATCAATGGAACTGGGTGTATGAATGGAAGGAATTAATCCCTATTCATATCATGACAGGATTGcttgataaattctttttcccaAAATGGCTACAAGTCTTAGCGCTTTGGCTTAATCATTCGCCTAATTATGATCAAGTTACAACATGGTACATGGGTTGGAAAGGGATGTTGAGTGACAAGTTACTAGCTGAACCAATAATAAAAGAACACTTCAAGAAAGCATTGGACATGATGAACAGGGCCGTCAGTGGACCACAAAATCATCAACCTGGCGCACTAGAACAGGTTTCATATTTAACAAGCTTGGAGAGAACTCAGCCGACAATGTCTCAAATAGCACCGATTGCGCAGCCGAGAATGGAGGTAAGAATTACGCGTTTTTCACTTAAATTGACATTGTTAATTCATTCAAGCATATTTTACGTGACTTTCTGTTCATGCCAGCtattgttcttttattttataatatattttata
- Protein Sequence
- MSEDEVESFEITDYDLDNEFNIARPRRKLSKKEQMLGIWADDSDEELSARPSFKTFNKGPKNYTAPVNFVAGGIQQAGKPKEKEDKDDEEETRETKYSSSSSEDERPNSSKSRPSFSLNLDSDIAGLRKKRNQINPLLMKSGMGSWEVHTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHLRKGRGAIGAYGPEKTPKIPEKKKEDDGEEVRESKSKVSQWRKGDNSNKKKVRYSYRSVDQVLEDGKLKPNRKLPVSSDMARVKVIDMTGPEQRILSGYHAIAGGQQCPDETGITSDKKSKVNFALPELQHNLNLLVDMCEQDIIQNDRRMRHLNDRAIALEAEKKNLSKIVDQHSQLIDTLENVLVIVDRLMNETKELSLQETAEAFKNLQDNYYEEYKMYELGELASSFVAPKIKDCLLNWNPLMQPKQQIKLFEQWKSILENEASTTLQTRTMHSYDQLVWNAWMPSIRGAIQQWTCRQPEPLIELIEYWMPLLPNWILENILDLLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFAKGDMEAFLVKNIIPKLQTALSEFVINPHQQHLDQWNWVYEWKELIPIHIMTGLLDKFFFPKWLQVLALWLNHSPNYDQVTTWYMGWKGMLSDKLLAEPIIKEHFKKALDMMNRAVSGPQNHQPGALEQVSYLTSLERTQPTMSQIAPIAQPRMEVRITRFSLKLTLLIHSSIFYVTFCSCQLLFFYFIIYFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00898736;
- 90% Identity
- iTF_00898736; iTF_00417553; iTF_01476913; iTF_01261827; iTF_00016676; iTF_00015365; iTF_00125921; iTF_00128195; iTF_00128971; iTF_00129739; iTF_00127451; iTF_00127452; iTF_01476167; iTF_01422924; iTF_01423654; iTF_01407277; iTF_01408206; iTF_01408207; iTF_01409109; iTF_01405691; iTF_00885103; iTF_00765577; iTF_01228367; iTF_00181298; iTF_00181957; iTF_00126709; iTF_01477559; iTF_00014714; iTF_00016032; iTF_00385312; iTF_01229015; iTF_01523353; iTF_01520221;
- 80% Identity
- -