Ccot008207.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- tfip11_1
- Assembly
- GCA_001594065.1
- Location
- NW:5220-9263[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-101 7.5e-98 326.9 18.1 1 275 390 658 390 658 0.98 2 2 0.0077 45 2.9 0.1 245 272 673 700 664 703 0.86
Sequence Information
- Coding Sequence
- atgTCGGAGGACGAAGTTGAAAGTTTCGAAGTTACTGATTATGACTTGGATAATGAATTTAACATTGCTCGTCCTCGACGCAAACTTTCAAAGAAACAACAAATGCTAGgAATATGGGCAGATGATAGTGATGAAGATGAATTATCTAGCAGACCatcttttaaaacttttaacaaGGGTCCTAAGAATTATACAACACCAGTTAATTTTGTCGCTGGTGGTATACAACAAGCAGGACAACCAAAAGACAAGGAAGCTGAAGACAATGAAGAAGACGAAGAAGAAACACAGGATTCTCAAACAAAGTATAGTAGTTCAAGtTCAGAAGATGAGAAGTCAAATAATTCCAAATCACGTCCATCTTTCTCTTTGAATTTGGATAGTGACATTGCAGGTCTACGTAAAAAGCGTAATCAAGTGAATCCTTTATTGATGAAAAGTGGAATGGGTAGTTGGGAAGTACATACAAAGGGTATTGGTGCTAAATTATTGCTACAGatgGGATTTGAACCTGGTAAAGGCTTAGGTAAACAATTACAAGGAATAAGTGCACCAGTAGAAGCACATCTCAGAAAAGGAAGAGGTGCAATAGGTGCATATGGTCCAGAAAAAACGCCAAAGATTcctgagaaaaagaaagatgacGAGGGGGAGGAAACAAAAGAATCTAAATCCAAATCCGTATCTCAGTGGCGGAAGGGTGATagcagcaaaaaaaaaatcagatatTGTTACAGAAGTATAGATCAAGTTTTAGAAGATGGAAAACTGAAACCTAATAAAAAACTTCCAGTATCAAGCGATATGAGTAGAGTTAAAGTTATCGATATGACAGGACCGGAACAAAGAATTCTTAGTGGATACCATGCAATAGCTGGTGGTCAGCAGTGTCCTGATGAGACTGTGATTACGTCTGATAAAAGATCTAAAGTAAACTTTGCCCTGCCTGAATTACagcataatttaaatttacttgtAGATATGTGTGAGCaagatattattcaaaatgatCGACGAATGAGACATTTAAATGATAGAGTAATTGCTTTAGAagcagaaaaaaagaattcgtCCAAAGTCGTGGATCAACATATCCAACTTATTGATACTTTAGAGAATGTGCTTGTAATTGTAGATAAGTTAATGAATGAAACGAACGAATTGTCATTGGAAGAAACTGCAGaggcttttaaaaatttacaaaacaattattatgaaGAGTATAAGATGTATGAACTTGGTGAATTAGCCAGCAGTTTTGTGGCACCAAAAATAAAGGATTGTTTGCTTAATTGGAATCCATTATTGCAACCAAAACAACCGATTAAATTATTCGAACAGTGGAAAGATATCTTGGAGAATGGAATTAGTACAACACTGCAAACACAGACTATGCAGTCATATGATCAACTAGTATGGAATGCATGGATGCCATCAATTAGAGGAGCCATACAacaGTGGTCATGTAGGCAGCCTGAGCCTTTAATAGAATTAGTAGAATACTGGATGCCGTTATTACCCAATTggattttggaaaatatattagacTTATTAGTATTACCAAAATTAACATTGGAAGTTGAAGAATGGAATCCCCTTACTGATACTGTACCTATTCATACATGGATTCATCCTTGGTTACCATtattacGAAATcgtttagatactttaatttatcCAATAATACGTAGAAAACTCGGATCTGCATTAGGAGGTTGGCATCCATCAGATAGATCTGCTAGATTAATGTTGCAACCGTGGGCAGAAGTGTTTGCTAAAGGAGACATGGAAGCgtttttagttaaaaacattattccaAAATTGCAAATAGCTTTATCTGAGTTTGTTATAAATCCACATCAACAGCACTTAGATCAATGGAATTGGGTGTATGAATGGAAAGAATTAATCCCTGTTCATATCATGGCAGGATTACTTGACAAATTCTTTTTCCCAAAATGGCTACAAGTTTTAGCACTTTGGCTCAATCATTCGCCTAATTATGATCAAGTTACAACTTGGTATATGGGTTGGAAGGGGATGTTAAGTGACAAGTTACTAGCGGAACCAGTAGTAAAagAGCATTTTAAGAAAGCATTGGACATGATGAATAGGGCTGTCAGTGGGCCACAAACTCATCAACCTGGTGCAATCGAACAAGTTTCATATTTAACAAGCTTAGAGAGAACTCAGCCAACAATATCGCAGGTGGCACCAATTGCGCAACCGAGAATGGAGAGACTCGCAGAGGCAGTACGAACAGCTTCACAAATTCCGCAGGGTTTCAAGGATTTCGTACAAAAGAAGTGTGAAGAGAgaggtatattatttataccgATTCCGAATAGATACAAGGAAGCTAAGCAAGTGTATAAAGTGGGCAATGTTCAAGCCTACATTGACAACAATGTCTTATTTGTATGTCACAATGGTACAAATTGGATGCCAACGCATTTGAATGCCTTATTGGATATGTctgaactttaa
- Protein Sequence
- MSEDEVESFEVTDYDLDNEFNIARPRRKLSKKQQMLGIWADDSDEDELSSRPSFKTFNKGPKNYTTPVNFVAGGIQQAGQPKDKEAEDNEEDEEETQDSQTKYSSSSSEDEKSNNSKSRPSFSLNLDSDIAGLRKKRNQVNPLLMKSGMGSWEVHTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHLRKGRGAIGAYGPEKTPKIPEKKKDDEGEETKESKSKSVSQWRKGDSSKKKIRYCYRSIDQVLEDGKLKPNKKLPVSSDMSRVKVIDMTGPEQRILSGYHAIAGGQQCPDETVITSDKRSKVNFALPELQHNLNLLVDMCEQDIIQNDRRMRHLNDRVIALEAEKKNSSKVVDQHIQLIDTLENVLVIVDKLMNETNELSLEETAEAFKNLQNNYYEEYKMYELGELASSFVAPKIKDCLLNWNPLLQPKQPIKLFEQWKDILENGISTTLQTQTMQSYDQLVWNAWMPSIRGAIQQWSCRQPEPLIELVEYWMPLLPNWILENILDLLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHLDQWNWVYEWKELIPVHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTTWYMGWKGMLSDKLLAEPVVKEHFKKALDMMNRAVSGPQTHQPGAIEQVSYLTSLERTQPTISQVAPIAQPRMERLAEAVRTASQIPQGFKDFVQKKCEERGILFIPIPNRYKEAKQVYKVGNVQAYIDNNVLFVCHNGTNWMPTHLNALLDMSEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00898736;
- 90% Identity
- iTF_01421552;
- 80% Identity
- -