Apic022998.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphaenogaster picea
Gene Symbol
tfip11
Assembly
GCA_003063865.1
Location
NJRM01000290.1:58070-61482[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 6.7e-102 8.3e-98 327.8 17.6 1 275 388 656 388 656 0.98
2 2 0.0045 56 3.7 0.1 245 273 671 699 662 701 0.87

Sequence Information

Coding Sequence
ATGTCTGAAGACGAAGTGGAAAGCTTTGAAATTACCGATTATGATTTAGAGAATGAATTTAACATAGCTCGTCCCCGACGCAAACTCTCGAAGAAACAACAAATGTTAGGGATATGGGCAGACGACAGTGATGAGGATGAATTATCTGCCAGACCGTCTTTTAAGACTTTTAACAAAGGTCCTAAGAATTATACAGCACCAGTAAATTTCGTCGCTGGTGGTATCCAACAAGCAGGAAAAccaaaagaaaaggaagataaggatgaggaagaagatgaagaagagaTGCTGGAATCAAAGCACAGTAGCTCGAGttCGGAAGATGAGAGGCCAAATAGTTCAAAATCACGTCCATCCTTCGCCATGAATTTGGATAGCGACATCGCAGGTTTACGTAAAAAGCGCAATCAAATAAATCCATCATTGATTAAAAGTGGAATGGGTAGTTGGGAAGTGCATACAAAGGGCATTGGTGCAAAATTGTTGCTACAGATGGGATTTGAACCTGGTAAAGGTCTAGGTAAACAATTACAAGGAATAAGCGCACCAGTAGAAGCGCATCTAAGAAAAGGAAGAGGTGCAATTGGTGCGTATGGTCCAGAAAAGACGCCAAAGATTcccgagaaaaagaaagatgacGATGGGGAGGAAACAAAAGATTCCAAGTCCAAAGTATCTCAATGGCGGAAGGGTGATAATAGCAACAAGAAAAAAGTCAGATATTGTTATAGAAGTGTAGATCAAGTTTTGGAAGATGGAAAACTGAAACCTAATAGAAAAGTTCCAGTGTCTAGCGATATAAGCAGAGTTAAAGTTATCGATATGACTGGgccagaacaaagaattcttaGTGGATATCATGCAATAGCTGGTGGTCAGCAGTGTCCTGATGAGACCGTAATAACATCTGATAAGAAATCTAAAACGAACTTTGCCCTGCCCGAGTTGcagcataatttaaatttacttgtgGATATGTGCGAGCAAGATATTATTCAAAACGATCGGCGAATGAGACATTTAAGTGATAGAATGGTTGCTTTAgaagcagaaaaaaagaatttgtccAAAGTCGTGGATCAACATAGTCAACTGATTGATACCTTGGAGAATGTGCTCGTGATCGTGGACAGATTGATGAATGAAACGAACGAATTGTCGCTACAAGAAACTGCAGAGgcttttaaaaatttgcaagaCAATTATTATGAAGAGTACAAGATGTACGAAATTGGTGAATTAGCTAGCAGTTTTGTGGCGCCGAAAATAAAAGATTGCTTACTCAATTGGAATCCATTAATGCAACCAAAACAGccgattaaattatttgaacagTGGAAAAGTATCTTGGAAAGTGGAACTAGTACAACACTCCAGACACGCACTATGCAGTCATACGATCAACTAGTATGGAATGCATGGATGCCGTCAATTAGAGGAGCCATAcaGCAGTGGGTATGTAGGCAACCTGACCCTTTGGTTGAATTAATAGAGTATTGGATGCCGTTATTACCCAACTGGATCTTAGAAAATATATTGGACTTGTTAGTATTACCAAAATTGACATTAGAGGTGGAAGAGTGGAATCCTCTTACTGATACTGTACCTATTCATACATGGATTCATCCTTGGTTGCCATTGTTACGAAATCGTTTAGATACTTTGATTTATCCAATAATACGTAGAAAACTCGGATCTGCATTAGGAGGTTGGCATCCATCAGACAGATCCGCTAGATTAATGCTGCAACCTTGGGCAGAAGTGTTTGCCAAAGGAGATATGGAAGCGTTTTTAGTCAAGAACATTATTCCAAAATTGCAAATAGCCTTATCCGAATTTGTTATAAATCCCCATCAACAGCACTTAGATCAATGGAATTGGGTGTACGAGTGGAAAGAATTAATTCCTGTTCATATTATGGCAGGATTGcttgataaattctttttcccCAAATGGCTACAAGTTTTGGCACTTTGGCTCAATCATTCGCCTAATTATGATCAAGTTACAACCTGGTACATGGGTTGGAAAGGGATGTTAAGTGACAAGTTACTGGCGGAACCAGTAATAAAAGAGTATTTCAAGAAAGCATTGGACATGATGAATAGAGCCGTCAGCGGGCCACAAAATCATCAACCTGGCGCACTAGAACAAGTTTCATATTTAACAAGTTTAGAGAGAACTCAGCCGACAATATCACAGATGGCACCGATTGCGCAGCCGAGAATGGAGAGACTTGCAGAGGCAGTGCGAACAGCCTCGCTAATTCCGCAAGGTTTCAAGGATTTCGTACAAAAGAAATGTGAAGAGAGAGGTATATTATTTATGCCAATCCCGAACAGATACAAGGAGGCTAAGCAAGTGTACAAAGTGGGCAATGTTCAGGCATACATTGACAGCAACGTTTTGTTTGTTTGTCATAATGGTACAAATTGGATGCCGACGCATTTAAATGCCCTGCTGGACATGTCtgaactttaa
Protein Sequence
MSEDEVESFEITDYDLENEFNIARPRRKLSKKQQMLGIWADDSDEDELSARPSFKTFNKGPKNYTAPVNFVAGGIQQAGKPKEKEDKDEEEDEEEMLESKHSSSSSEDERPNSSKSRPSFAMNLDSDIAGLRKKRNQINPSLIKSGMGSWEVHTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHLRKGRGAIGAYGPEKTPKIPEKKKDDDGEETKDSKSKVSQWRKGDNSNKKKVRYCYRSVDQVLEDGKLKPNRKVPVSSDISRVKVIDMTGPEQRILSGYHAIAGGQQCPDETVITSDKKSKTNFALPELQHNLNLLVDMCEQDIIQNDRRMRHLSDRMVALEAEKKNLSKVVDQHSQLIDTLENVLVIVDRLMNETNELSLQETAEAFKNLQDNYYEEYKMYEIGELASSFVAPKIKDCLLNWNPLMQPKQPIKLFEQWKSILESGTSTTLQTRTMQSYDQLVWNAWMPSIRGAIQQWVCRQPDPLVELIEYWMPLLPNWILENILDLLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHLDQWNWVYEWKELIPVHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTTWYMGWKGMLSDKLLAEPVIKEYFKKALDMMNRAVSGPQNHQPGALEQVSYLTSLERTQPTISQMAPIAQPRMERLAEAVRTASLIPQGFKDFVQKKCEERGILFMPIPNRYKEAKQVYKVGNVQAYIDSNVLFVCHNGTNWMPTHLNALLDMSEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00898736;
90% Identity
iTF_01421552;
80% Identity
iTF_00129739; iTF_00127451; iTF_00127452;