Pden009252.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex dendroicus
Gene Symbol
tfip11
Assembly
GCA_014825645.1
Location
QVNZ01020725.1:5607-9633[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.7e-101 7.4e-97 324.8 18.2 1 275 392 660 392 660 0.99
2 2 0.3 3.9e+03 -2.3 0.0 245 261 675 691 670 697 0.81

Sequence Information

Coding Sequence
ATGTCCGAAGACGAAATGGAAAGCTTTGAAATTACTGACTATGATTTAGATCATGAATTTAATCCAGCCCGTCCTCGACATAAACTTTCTAAGAGACAACAAATGCTAGGAATATGGGCTGATGATAGCGACGAAGACGATTTATCTGCAAGACCATCCTTTAAAACTTATAACAAAGGTCCGAAGAATTATACAGCACCAGTTAATTTTGTTGCTGGTGGTATTCAACAAGCAGGTAAACCAAAAGAAGAAGATAAGAAAGATGAAGAAGAAAGAGAAGAAGAAGAAGAAGAAGAAGAGGCAGGAGAATCCCAAACAAAATATCAAAGTAATTCAAGTTCAGAAGATGAAAAGCTAAATAGTTCATCACGACCATCTTTCTCTTTAAATTTAGACAGTGATATTGCAGGTCTACGCAAAAAACGTAATCAAGTTAATCCATTATTGATGAAAAGTGGTATGGGAAGTTGGGAGATTCACACAAAGGGTATTGGTGCAAAACTGTTATTACAGATGGGTTTTGAACCTGGTAAAGGTTTAGGTAAACAATTGCAAGGAATAAGTACGCCGGTGCAAGCACATCTCAGAAAAGGAAGAGGTGCAATTGGTGCATATGGTCCAGAAAAAATATCAAAACTTCTAGAGAAAAAGGAAAGTAACGAAGTGGAAGAAACACCAGAATCTAAATCCAAATTATCACAATGGAGGAAGAGTGATAGTAATAAGAAAAAAGTTAGATACATTTATAGAAGTGTGGATCAAGTTTTGGAAGATGGAAAAGTAAAGCCTAATAGAAAACTTCCAGTTTCTAGTGATATGAGCAAAGTCAAAGTTATTGATATGACGGGACCAGAACAGAGAATTCTTAGTGGATATCATGCGATATCTGGTGCTCAGCAGTGTTCAGATGAGATCGCATCTGATAAAGAATCTAAAATAAATTTTGCTCTGCCTGAATTACAACATAATTTAAATTTACTCGTGGATATGTGCGAACAAGATATTATTCAAAACGACCGACTAATAAGACATTTAAATGATAGAAAAATTGCTTTAGAAGCAGAAAAAAAGAATCTATTTAAAGTTCTTGATCACCACAGTCAACAAATTGAGACTTTGGAGAACATGCTTACGATTGTGGATAAATTACTGAACACAACAAATGAACTGTCTTTACAAGAGATTGCTGAGGCGTTTAAGCAATTGCAAGAAAATTATTACGAAGAGTACAGAATGTACGAACTTGGTGAATTGGCAAGCAGTTTTGTGGCACCAAAACTAAAAGATTATTTGCTTAGTTGGAATCCGTTAATGCAACCAAAAGAACCGATTAAATTATTTGTAACCTGGAAGGATGTTTTAGAGAAAGGAACTAGTACGACTCTTCAAATACAAACTATGCAGCCATACGATCAAGTAGTATGGAATGCGTGGATGCCATCAATTAGAGGAGCTATACAGCAATGGACGTGTAGACAACCTGATCCTCTGATCGAATTACTAGAACACTGGGTACCATTATTGCCTACTTGGATTTTAGAAAATATATTAGATCTATTAATCTTACCAAAATTGACATTAGAAGTAGAGGAATGGAATCCTCTTACTGATACTGTACCTATTCATACGTGGATTCATCCTTGGTTGCCGTTATTACGAAATCGTTTGGATACCTTAATTTATCCAATAATACGCAGAAAACTTGGATCTGCATTAGGAGGTTGGCATCCATCAGACAGATCCGCTAGATTAATGCTTCAACCTTGGGCGGAGGTATTTACCAAAGGGGACATGGAAGCATTTTTAATCAAGAATATTCTTCCTAAATTACAAATAGCATTATCCGAGTTTGTTATAAATCCGCACGAGCAACATTTAGATCAATGGAATTGGGTTTACGAGTGGAAAGAATTGATTCCTGTTCATATAATGGCAGGTCTACTTGACAAATTCTTTTTCCCAAAGTGGTTACAAGTCTTGGCACTTTGGTTGAATCATTCACCTAATTACGATCAAGTTACAACCTGGTACATGGGCTGGAAAGGAATGCTAAGTGATAAGTTATTAGGAGAACCAATAATAAAAGTTTTTACAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAGAACATTTCAAGAAAGCATTAGATATGATGAATAGGGCTGTCAGCGGACCACAAAGTCATCAACCCGGCGCACTGGAACAAGTTTCGTATTTGACGAGCTTAGAAAGAACTCAGCCAACAATGCCGCAAATAACACCTATAGCACAACCAAGAATGGAGAGACTTGCAGAAGCAGTACGAACAGCCTCACAAATCCCACAAGGTTTCAAGGATCTTGTACAAAAGAAATGCGAGGAGAGGGGTATATTATTTATGCCGATTCTGAACAGATACAAAGAAGGCAAGCAAGTATACAAAGTAGGCAATGTTCAAGCATACATCGATGGCAATGTCGTGTTTGTATGTCACAATGGTACAAATTGGATGCCAACACATTTAAATGCTTTGCTCGATATGTCTGAACTTTAA
Protein Sequence
MSEDEMESFEITDYDLDHEFNPARPRHKLSKRQQMLGIWADDSDEDDLSARPSFKTYNKGPKNYTAPVNFVAGGIQQAGKPKEEDKKDEEEREEEEEEEEAGESQTKYQSNSSSEDEKLNSSSRPSFSLNLDSDIAGLRKKRNQVNPLLMKSGMGSWEIHTKGIGAKLLLQMGFEPGKGLGKQLQGISTPVQAHLRKGRGAIGAYGPEKISKLLEKKESNEVEETPESKSKLSQWRKSDSNKKKVRYIYRSVDQVLEDGKVKPNRKLPVSSDMSKVKVIDMTGPEQRILSGYHAISGAQQCSDEIASDKESKINFALPELQHNLNLLVDMCEQDIIQNDRLIRHLNDRKIALEAEKKNLFKVLDHHSQQIETLENMLTIVDKLLNTTNELSLQEIAEAFKQLQENYYEEYRMYELGELASSFVAPKLKDYLLSWNPLMQPKEPIKLFVTWKDVLEKGTSTTLQIQTMQPYDQVVWNAWMPSIRGAIQQWTCRQPDPLIELLEHWVPLLPTWILENILDLLILPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFTKGDMEAFLIKNILPKLQIALSEFVINPHEQHLDQWNWVYEWKELIPVHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTTWYMGWKGMLSDKLLGEPIIKVFTVXXXXXXXXXXXXXXXXXXXXXXXXXXLEHFKKALDMMNRAVSGPQSHQPGALEQVSYLTSLERTQPTMPQITPIAQPRMERLAEAVRTASQIPQGFKDLVQKKCEERGILFMPILNRYKEGKQVYKVGNVQAYIDGNVVFVCHNGTNWMPTHLNALLDMSEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00898736;
90% Identity
iTF_01266879;
80% Identity
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