Basic Information

Insect: Xylocopa violacea
Gene Symbol: -
Assembly: GCA_963969225.1
Location: CAXAJV010000006.1:32264584-32266465[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.083 6.7 7.5 0.5 2 23 135 156 134 156 0.97

2 15 3.4e-05 0.0027 18.2 1.4 2 23 161 182 160 182 0.98

3 15 2.2e-05 0.0018 18.8 2.5 2 23 189 210 188 210 0.97

4 15 3.6e-06 0.00029 21.3 1.6 1 23 243 265 243 265 0.98

5 15 0.00012 0.0096 16.5 0.8 1 23 271 293 271 293 0.98

6 15 8.3e-06 0.00067 20.1 3.0 1 23 299 321 299 321 0.97

7 15 1.6e-06 0.00013 22.4 1.7 1 23 327 349 327 349 0.96

8 15 3.4e-05 0.0028 18.2 0.6 1 23 355 377 355 377 0.98

9 15 3.2e-05 0.0026 18.3 6.8 1 23 383 405 383 405 0.97

10 15 8.9e-08 7.2e-06 26.3 1.0 1 23 410 432 410 432 0.97

11 15 0.00055 0.045 14.4 0.2 1 23 438 460 438 460 0.97

12 15 1.8e-06 0.00015 22.2 5.6 1 23 466 488 466 488 0.96

13 15 2.3e-06 0.00019 21.9 1.9 1 23 494 516 494 516 0.98

14 15 1.6e-05 0.0013 19.2 1.4 1 23 522 544 522 544 0.98

15 15 0.00036 0.029 15.0 2.3 1 23 550 573 550 573 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.083	6.7	7.5	0.5	2	23	135	156	134	156	0.97
2	15	3.4e-05	0.0027	18.2	1.4	2	23	161	182	160	182	0.98
3	15	2.2e-05	0.0018	18.8	2.5	2	23	189	210	188	210	0.97
4	15	3.6e-06	0.00029	21.3	1.6	1	23	243	265	243	265	0.98
5	15	0.00012	0.0096	16.5	0.8	1	23	271	293	271	293	0.98
6	15	8.3e-06	0.00067	20.1	3.0	1	23	299	321	299	321	0.97
7	15	1.6e-06	0.00013	22.4	1.7	1	23	327	349	327	349	0.96
8	15	3.4e-05	0.0028	18.2	0.6	1	23	355	377	355	377	0.98
9	15	3.2e-05	0.0026	18.3	6.8	1	23	383	405	383	405	0.97
10	15	8.9e-08	7.2e-06	26.3	1.0	1	23	410	432	410	432	0.97
11	15	0.00055	0.045	14.4	0.2	1	23	438	460	438	460	0.97
12	15	1.8e-06	0.00015	22.2	5.6	1	23	466	488	466	488	0.96
13	15	2.3e-06	0.00019	21.9	1.9	1	23	494	516	494	516	0.98
14	15	1.6e-05	0.0013	19.2	1.4	1	23	522	544	522	544	0.98
15	15	0.00036	0.029	15.0	2.3	1	23	550	573	550	573	0.97

Sequence Information

Coding Sequence: ATGGAAGATTTTAAAGTGAAAGATGAACCAATGGATGTGTTAAACATAGACAGTCAGGTTATGGACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCCGACTACATGGAGGACATCTGCTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAACGAAGTTGACTTCTCTAATGAAATGGTAAAACTTGAACTGGATGGGGAATCCAGTAGCCATCAAAATTGGACGGCACAAATTACGAGCACGAATCTGTGCGACAAAGAAGATGGTGCTATGCAAAGGTGTTTAGGGAACGCGAACTTTGCTCAAGCGCACGATGCAGATAAACATTCTGGGTTTTGTCCAAACGGGCAGCAAccgaaattttataaaatacaatGTTCCATTTGCAAGAAATGGTTCTTAAACAACGATTCTATGGTAACCCATCTGAAAATGCACTGTAACGGGAACCAGTGCGAGGTTTGTCAACAAAATTTTCAGGATAATTCGAGTCTACACGCGCATATGTTGACTCACGTCGGGATGAGTCCATTGGAATGCAACGTTTGTCAAAAACGATTCGCTTATAAATGGTGTTTACGTAGCCATATGCAAATGCATGCCCTAGAAAAGCCATACGACGATGCGTTACAACAAGCATTTATGAAGAGACCAGATTCTGAGCACGACCAATCGATAAATACAGACGAAAGGGTATTCGAATGTGACGTCTGTCACGCGACGTTTAAAGAAAAATCTAGTCTAAATCGGCATGTGCTTACTCATACAGAGGAAAGACCGTATAAATGCGACGTATGTTTCGCAGCATTTAGAGAAAAGTCAAAGTTGAACATGCATATGACGTTACACGGTGGAAGCAAACAATTCAAGTGTACAATGTGTCATAGATCGTTCATGCAGAAAACAGCGTTGAACAATCATATGTTAGCGCATAGTGGTGAGAAACCACACGCGTGTAATGTTTGTGAAAAGACGTACAAACGAAAGTCAGAGTTGATAAGGCATACGATGGTTCATACCGGTGAAAGGCCGTACGAATGTAAAGAATGCCTGATGACTTTTCGGGAAAAGGCGAAATTGAACTCCCACATGCTTGTGCACACAGGTGAAAAGCCACACGAGTGTCATATATGTCATAAGGCGTGCGCCCGAAAGTCCGATCTTAACAGTCATATGCTATTACATACCGGCGGTCAGTACGATTGCAAAGTTTGCGATAAAATATTTACTCGTAAATCGGATTTGAATCGACACACCTTAATACACACAGGCGAAAAGCCGTTTGCCTGTGAATTATGCGAGATGGCCTTTAGAGAAAAGACTAGATTAAATTCTCATATGCTTATACATACGGGCGATAAACGACACGCTTGTCATATCTGTCAGAAAACGTTCAAAGAGAAGTCTTCGTTACGAAAACACATGTTGAGTCACACCGGTGACAGACCGTACGAATGTTACGTATGTCACAAAGCATTTACTCAAAAAACAACGTTAAATAGTCATATATTGGTACACGCAGGCGAACGACCGTACGAGTGTAGCGCGTGTCAGAAAATATTTAAAGACAAAACAATGCTGAAAAAGCATTTGTCTATGCACATAAATGAAAAAACTCACGAATGTCTGATCTGTTTAAAAAAGTTTGCCCATAAAGCTGCATTAAATAGTCATTTGTCGACGAATCATACGTCATAA
Protein Sequence: MEDFKVKDEPMDVLNIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKVFLPIENNEVDFSNEMVKLELDGESSSHQNWTAQITSTNLCDKEDGAMQRCLGNANFAQAHDADKHSGFCPNGQQPKFYKIQCSICKKWFLNNDSMVTHLKMHCNGNQCEVCQQNFQDNSSLHAHMLTHVGMSPLECNVCQKRFAYKWCLRSHMQMHALEKPYDDALQQAFMKRPDSEHDQSINTDERVFECDVCHATFKEKSSLNRHVLTHTEERPYKCDVCFAAFREKSKLNMHMTLHGGSKQFKCTMCHRSFMQKTALNNHMLAHSGEKPHACNVCEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACELCEMAFREKTRLNSHMLIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPYECSACQKIFKDKTMLKKHLSMHINEKTHECLICLKKFAHKAALNSHLSTNHTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141345; iTF_01066404; iTF_00141959; iTF_01065711; iTF_01070511; iTF_01068432; iTF_01069812; iTF_01069111; iTF_00140729; iTF_00142590; iTF_00963976; iTF_00225377; iTF_00360354; iTF_00361058; iTF_00223331; iTF_00226052; iTF_00303268; iTF_00215845; iTF_00218565; iTF_00222662; iTF_00963334; iTF_00684297; iTF_00964617; iTF_00228811; iTF_00228108; iTF_00684908; iTF_00024749; iTF_00226733; iTF_00961966; iTF_00220721; iTF_00224017; iTF_00229489; iTF_01417842; iTF_00232115; iTF_00862035; iTF_00219252; iTF_00221396; iTF_00222036; iTF_00224693; iTF_00215158; iTF_00233367; iTF_00761111; iTF_00214520; iTF_00230169; iTF_00962649; iTF_00216539; iTF_00232731; iTF_01122587; iTF_01123195; iTF_00734076; iTF_00982428; iTF_00983100; iTF_00217885; iTF_00217214; iTF_00231454; iTF_00118143; iTF_00219935; iTF_00230815; iTF_01169314; iTF_01228514; iTF_01409377; iTF_00765826; iTF_00126147; iTF_00385769; iTF_00885321; iTF_01421705; iTF_01422377; iTF_01408462; iTF_01423822; iTF_01407568; iTF_00126899; iTF_00129171; iTF_01405940; iTF_00128410; iTF_01229180; iTF_00127646; iTF_00129920; iTF_01267009; iTF_01269959; iTF_01267721; iTF_01270670; iTF_01268438; iTF_01269209; iTF_01271385; iTF_01476419; iTF_00182758; iTF_01423078; iTF_00182119; iTF_01261965; iTF_00015536; iTF_01477072; iTF_01354769; iTF_00181462; iTF_01355607; iTF_00417756; iTF_01477789; iTF_01520454; iTF_00754947; iTF_00088233; iTF_00393738; iTF_01255842; iTF_00773967; iTF_01513832; iTF_01514952; iTF_01233801; iTF_01514506; iTF_01232526; iTF_01513615; iTF_01232691; iTF_01515155; iTF_01090132; iTF_01514295; iTF_01234492; iTF_01512958; iTF_00625642; iTF_00756842; iTF_00864778; iTF_00862722; iTF_01071139; iTF_00966148; iTF_00762696; iTF_00184073; iTF_00763372; iTF_00866157; iTF_00860561; iTF_00863409; iTF_00864114; iTF_00861336; iTF_00866840; iTF_00865469; iTF_01420397; iTF_01418476; iTF_01419768; iTF_01421054; iTF_00087361; iTF_01067078; iTF_01067747; iTF_01419125; iTF_00873926; iTF_00227409; iTF_00633790; iTF_00391476; iTF_01424511; iTF_01498349; iTF_00730223; iTF_00280101; iTF_00264459; iTF_00265173; iTF_01245369; iTF_00109979; iTF_00729504; iTF_01087369; iTF_00452713; iTF_00769835; iTF_00868268; iTF_00869050; iTF_00867615; iTF_01077654; iTF_00084723; iTF_00089002; iTF_01523540; iTF_00306425; iTF_00086555; iTF_00085603; iTF_01099387; iTF_00899004; iTF_01254975;
90% Identity: iTF_00087361;
80% Identity: -