Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: -
Assembly: GCA_001594075.1
Location: NW:3211058-3213532[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.072 5 7.2 0.8 2 23 143 164 142 164 0.97

2 15 2.8e-06 0.00019 21.1 1.5 2 23 169 190 168 190 0.98

3 15 2.4e-06 0.00017 21.3 0.7 2 23 197 218 196 218 0.96

4 15 6.2e-06 0.00043 20.0 2.4 1 23 251 273 251 273 0.97

5 15 0.00091 0.063 13.2 0.5 1 20 280 299 280 302 0.95

6 15 1.5e-06 0.0001 22.0 2.2 1 23 308 330 308 330 0.97

7 15 6.4e-07 4.4e-05 23.1 1.8 1 23 336 358 336 358 0.96

8 15 2.4e-05 0.0017 18.2 0.6 1 23 364 386 364 386 0.98

9 15 2.3e-05 0.0016 18.3 6.8 1 23 392 414 392 414 0.97

10 15 6.2e-08 4.3e-06 26.3 1.0 1 23 419 441 419 441 0.97

11 15 6.5e-05 0.0045 16.8 0.3 1 23 447 469 447 469 0.97

12 15 2.5e-06 0.00017 21.3 4.8 1 23 475 497 475 497 0.96

13 15 1.7e-06 0.00012 21.8 1.9 1 23 503 525 503 525 0.98

14 15 1.9e-05 0.0013 18.5 1.7 1 23 531 553 531 553 0.98

15 15 0.0053 0.37 10.8 3.2 1 23 559 582 559 582 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.072	5	7.2	0.8	2	23	143	164	142	164	0.97
2	15	2.8e-06	0.00019	21.1	1.5	2	23	169	190	168	190	0.98
3	15	2.4e-06	0.00017	21.3	0.7	2	23	197	218	196	218	0.96
4	15	6.2e-06	0.00043	20.0	2.4	1	23	251	273	251	273	0.97
5	15	0.00091	0.063	13.2	0.5	1	20	280	299	280	302	0.95
6	15	1.5e-06	0.0001	22.0	2.2	1	23	308	330	308	330	0.97
7	15	6.4e-07	4.4e-05	23.1	1.8	1	23	336	358	336	358	0.96
8	15	2.4e-05	0.0017	18.2	0.6	1	23	364	386	364	386	0.98
9	15	2.3e-05	0.0016	18.3	6.8	1	23	392	414	392	414	0.97
10	15	6.2e-08	4.3e-06	26.3	1.0	1	23	419	441	419	441	0.97
11	15	6.5e-05	0.0045	16.8	0.3	1	23	447	469	447	469	0.97
12	15	2.5e-06	0.00017	21.3	4.8	1	23	475	497	475	497	0.96
13	15	1.7e-06	0.00012	21.8	1.9	1	23	503	525	503	525	0.98
14	15	1.9e-05	0.0013	18.5	1.7	1	23	531	553	531	553	0.98
15	15	0.0053	0.37	10.8	3.2	1	23	559	582	559	582	0.95

Sequence Information

Coding Sequence: ATGGAAGGTTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCAGGTTATGGATGAGAACATTGTGAGCGTCGTGCTTAAGGAGGAACCAGGCGATAGAACATTTGATCCAGACTACATGGAGGATATTTGCTCAGGCACTTTCGAGAAGGGCACTCTCTTTTTGCCTATCGAAAACAATGAGGTGGATTTCTCCAACGAAATGGAGctttgtgaatttttacaggTGAAGTTAGAATTGGAAGGAGAATCGACCAGTCACCAAAACTGGTCGCAAATAGCAAATACTAATTTATGTGACAAGGAGGATATGATGCAACGATGCTTGactaatacaaattttatacaaacGCAAGACTCCGACAAGCATCATGGATTCTGTCAAAATGGACAACAACCGAAATTCTACAAGATCCAATGCTCAATGTGCAAGAAATGGTTTCTGAATAATGATTCTATGGTGACGCATCTAAAGACGCACTGTAGTGGAAATCAATGTGAGGTCTGTCAACAAAATTTTACTGACAACTCTAGCCTGCATGCTCACATGTTGACTCATGTTGGAATGAGTCCATTAGAGTGCAACATCTGTCAAAAAAGATTCGCTTATAAATGGAGCTTAAGAAGCCACATGCAATTACATGTATTAGATAAACCTTACGATTGTGATGCATTGCAGCAGGCTTTTATGAAGCGAGCTGGTATGAATGAACAGATAATGCCAATGGAAGACAGGCCCTTTGAATGTGATGTGTGTCACATGAcgtttaaagagaaaattaatttgaatcgACACATGACCAATCACACGAATGCGGACAAACCCTATAAATGCACGATTTGTTTCGAGGCATTCAAAGAGAAGGCGAAATTGAACATGCATTTGCCACTCCATACGGGAAACAAACATTTCAAGTGTACGTTGTGTCATAGATCGTTCGCCCAAAAAACCGCGCTCAACAATCACATGTTGGCGCATAGCGGTGAGAAACCACATGCGTGTAACATTTGTGAAAAAACATACAAGAGAAAATCAGAATTAATTAGGCATACTATGGTTCACACTGGTGAGAGACCATACGAGTGTAAAGAGTGCTTAATGACTTTTCGAGAAAAGGCCAAATTGAATTCCCATATGTTGGTCCACACGGGCGAGAAACCGCACGAGTGTCACATCTGTCACAAGGCATGCGCAAGAAAATCGGATTTAAACAGTCACATGTTATTACACACTGGTGGTCAATACGATTGCAAGGTTTGCGACAAAATCTTCACCAGGAAATCGGATCTGAATCGGCATACTCTAATACACACCGGTGAGAAACCGTTTGCGTGCAATATGTGCGACATGGCGTTCAGGGAGAAGACGCGATTAAACTCGCACATGATCATACATACAGGCGATAAGAGACACGCGTGTCACATCTGCCAGAAGACATTCAAGGAAAAGGCATCGTTGAAGAAACATATGTTAAGTCACACCGGTGACAGACCGTACGAATGTTATGTGTGTCACAAAGCTTTCACGCAGAAGACCACGTTAAACAGCCACATCCTGATTCACGCCGGTGAGAGACCATTTGAATGTAGTACTTGTCAAAAAATATGCAAAGATAAAGCAGCGTTGAAAAAGCACTTATTGGTGCACGTTAACGAAAAAACTCACGAATGTCttatttgtatgaaaaaattCGCCCATAAAACAGCATTAAATAGTCACCTGTCCTCAAATCACATATCCTAA
Protein Sequence: MEGFKVKDEPMDALAIDSQVMDENIVSVVLKEEPGDRTFDPDYMEDICSGTFEKGTLFLPIENNEVDFSNEMELCEFLQVKLELEGESTSHQNWSQIANTNLCDKEDMMQRCLTNTNFIQTQDSDKHHGFCQNGQQPKFYKIQCSMCKKWFLNNDSMVTHLKTHCSGNQCEVCQQNFTDNSSLHAHMLTHVGMSPLECNICQKRFAYKWSLRSHMQLHVLDKPYDCDALQQAFMKRAGMNEQIMPMEDRPFECDVCHMTFKEKINLNRHMTNHTNADKPYKCTICFEAFKEKAKLNMHLPLHTGNKHFKCTLCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACNMCDMAFREKTRLNSHMIIHTGDKRHACHICQKTFKEKASLKKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILIHAGERPFECSTCQKICKDKAALKKHLLVHVNEKTHECLICMKKFAHKTALNSHLSSNHIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_01228514;
80% Identity: -