Basic Information

Insect: Pseudomyrmex pallidus
Gene Symbol: -
Assembly: GCA_014825455.1
Location: QVNV01002317.1:4469-6385[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.033 3.2 8.7 0.5 2 23 136 157 135 157 0.97

2 15 8e-06 0.00078 20.0 0.9 2 23 162 183 161 183 0.98

3 15 1.1e-06 0.0001 22.8 0.7 2 23 190 211 189 211 0.96

4 15 3.5e-05 0.0034 18.0 4.1 1 23 244 266 244 266 0.97

5 15 6.5e-05 0.0063 17.2 1.0 1 23 272 294 272 294 0.98

6 15 1.9e-06 0.00018 22.0 2.2 1 23 300 322 300 322 0.97

7 15 1.1e-06 0.00011 22.8 1.1 1 23 328 350 328 350 0.96

8 15 3.1e-05 0.003 18.2 0.6 1 23 356 378 356 378 0.98

9 15 2.9e-05 0.0028 18.3 6.8 1 23 384 406 384 406 0.97

10 15 8e-08 7.8e-06 26.3 1.0 1 23 411 433 411 433 0.97

11 15 6.7e-05 0.0065 17.1 0.4 1 23 439 461 439 461 0.97

12 15 1.6e-06 0.00016 22.2 5.6 1 23 467 489 467 489 0.96

13 15 1.2e-06 0.00011 22.7 2.4 1 23 495 517 495 517 0.98

14 15 4.5e-05 0.0043 17.7 2.1 2 23 524 545 523 545 0.96

15 15 0.0024 0.24 12.2 3.4 1 23 551 574 551 574 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.033	3.2	8.7	0.5	2	23	136	157	135	157	0.97
2	15	8e-06	0.00078	20.0	0.9	2	23	162	183	161	183	0.98
3	15	1.1e-06	0.0001	22.8	0.7	2	23	190	211	189	211	0.96
4	15	3.5e-05	0.0034	18.0	4.1	1	23	244	266	244	266	0.97
5	15	6.5e-05	0.0063	17.2	1.0	1	23	272	294	272	294	0.98
6	15	1.9e-06	0.00018	22.0	2.2	1	23	300	322	300	322	0.97
7	15	1.1e-06	0.00011	22.8	1.1	1	23	328	350	328	350	0.96
8	15	3.1e-05	0.003	18.2	0.6	1	23	356	378	356	378	0.98
9	15	2.9e-05	0.0028	18.3	6.8	1	23	384	406	384	406	0.97
10	15	8e-08	7.8e-06	26.3	1.0	1	23	411	433	411	433	0.97
11	15	6.7e-05	0.0065	17.1	0.4	1	23	439	461	439	461	0.97
12	15	1.6e-06	0.00016	22.2	5.6	1	23	467	489	467	489	0.96
13	15	1.2e-06	0.00011	22.7	2.4	1	23	495	517	495	517	0.98
14	15	4.5e-05	0.0043	17.7	2.1	2	23	524	545	523	545	0.96
15	15	0.0024	0.24	12.2	3.4	1	23	551	574	551	574	0.97

Sequence Information

Coding Sequence: ATGGAAGATTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCAGGTTATGGACGAGAATATTGTGAGCGTTGTGCTTAAGGAAGAACCAGGTGACAAATTTGATCCTGACTACATGGAGGATATTTGCTCTGGTACTTTTGAGAAGGGCGCTTTATTTTTGCCTATCGAAAACAATGAGGTGGATTTTTCCAATGAGATGGTAAAGCTAGAGTTGGAAGGTGAATCTACAAGTCATCAAAACTGGACAGGTCCACTAGGGAATAATTTGTGCGATAAAGAAGATGGTGTAATGCAACGATGTTTGGCTAATGCAAATTTCATACAAACGCAAGATTCTGACAAGCATCATGGATTTTGTCAAAATGGACAGCAACCGAAATTTTATAAAATACAATGTTCTATTTGCAAGAAATGGTTTCTGAACAATGATTCAATGGTGACACATTTAAGAATGCATTGTAGTGGAAGTCAGTGTGAGGTTTGTCAGCAAACCTTCCCCGATAATACTAGCTTACATGCTCACATGTTAACTCACGTCGGAATGAGTCCGCTAGAGTGTAACATCTGCCAAAAAAGATTTGCTTACAAGTGGAACTTGAGAAGTCACATGCAATTGCACATATTGGATAAGCCATATGATTGCGATGCTTTGCAACAGGCTTTTATGAAACGTGCGAGTTTGAACGAGCAGATGATGCACATGGAAGAAAGACCCTTTGAATGCGACATGTGTCACATGACGTTCAAAGAGAAAATTCATCTGAATCGGCATATGGTTAGCCACACGACGGACAGACCCTACAAATGCTCGATTTGTTATGAAGGGTTCAAAGAGAAGACAAAACTAAATCTGCACATGTCTATTCATACCGGGAACAAGAATTTCAAGTGTACATTGTGTCATAGATCATTTGCTCAGAAAACGGCACTCAATAATCATATGCTGGCGCACAGCGGTGAGAAACCACACGCGTGTAACATATGTGAGAAAACGTATAAGAGGAAATCGGAATTAATCAGACACGCCATGGTTCACACCGGCGAGAGGCCGTACGAGTGCAAAGAGTGCTTGATGACTTTCCGCGAGAAGGCTAAATTGAATTCCCACATGTTGGTCCATACTGGTGAAAAACCGCACGAATGTCATATTTGTCACAAGGCGTGCGCGCGAAAATCTGACTTGAACAGTCACATGCTTCTGCATACTGGCGGTCAGTACGACTGTAAGGTTTGCGACAAGATTTTCACCAGAAAGTCGGATCTGAACAGACATACTCTCATACACACCGGTGAAAAGCCGTACGCGTGCACTATGTGCGACATGGCGTTTAGAGAGAAAACAAGATTGAACTCGCACATGCTCATACACACGGGTGATAAACGGCACGCGTGTCACATATGCCAGAAAACGTTCAAGGAAAAATCGTCGTTGAGAAAACACATGTTAAGTCACACCGGCGACAGGCCGTACGAGTGCTACGTATGTCACAAGGCTTTTACGCAAAAGACTACGCTGAACAGTCACATGTTGGTTCATGCTATCGAGAGACCTTTAGAATGTTGTACTTGTCAAAAAATATTCAAAGACAAGGCGGGGTTGAAAAAACATCTATTGATGCATGTTAACGAGAAAACCCACGAATGTCTTATTTGTATGAAAAAATTCGCCCACAAAACAGCATTAAATAATCACCTATCCACAAGCCACATATCCTAA
Protein Sequence: MEDFKVKDEPMDALAIDSQVMDENIVSVVLKEEPGDKFDPDYMEDICSGTFEKGALFLPIENNEVDFSNEMVKLELEGESTSHQNWTGPLGNNLCDKEDGVMQRCLANANFIQTQDSDKHHGFCQNGQQPKFYKIQCSICKKWFLNNDSMVTHLRMHCSGSQCEVCQQTFPDNTSLHAHMLTHVGMSPLECNICQKRFAYKWNLRSHMQLHILDKPYDCDALQQAFMKRASLNEQMMHMEERPFECDMCHMTFKEKIHLNRHMVSHTTDRPYKCSICYEGFKEKTKLNLHMSIHTGNKNFKCTLCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHAMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPYACTMCDMAFREKTRLNSHMLIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHMLVHAIERPLECCTCQKIFKDKAGLKKHLLMHVNEKTHECLICMKKFAHKTALNNHLSTSHIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00899004;
80% Identity: -