Basic Information

Insect: Andrena camellia
Gene Symbol: -
Assembly: GCA_029448645.1
Location: CM055679.1:1034859-1036781[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.039 3.7 8.7 0.5 2 23 135 156 134 156 0.97

2 15 4.4e-05 0.0043 17.9 1.0 2 23 161 182 161 182 0.97

3 15 2.4e-05 0.0023 18.8 2.5 2 23 189 210 188 210 0.97

4 15 8.4e-06 0.0008 20.2 0.5 1 23 246 268 246 268 0.98

5 15 0.00023 0.022 15.6 0.7 1 23 274 296 274 296 0.98

6 15 1.6e-06 0.00015 22.5 2.4 1 23 302 324 302 324 0.97

7 15 9.6e-07 9.2e-05 23.2 1.8 1 23 330 352 330 352 0.96

8 15 3.6e-05 0.0035 18.2 0.6 1 23 358 380 358 380 0.98

9 15 3.4e-05 0.0032 18.3 6.8 1 23 386 408 386 408 0.97

10 15 9.4e-08 9e-06 26.3 1.0 1 23 413 435 413 435 0.97

11 15 0.00017 0.016 16.1 0.2 1 23 441 463 441 463 0.97

12 15 1.1e-06 0.0001 23.0 5.8 1 23 469 491 469 491 0.97

13 15 2.4e-06 0.00023 21.9 1.9 1 23 497 519 497 519 0.98

14 15 5.4e-06 0.00052 20.8 0.6 1 23 525 547 525 547 0.98

15 15 0.00038 0.036 15.0 2.3 1 23 553 576 553 576 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.039	3.7	8.7	0.5	2	23	135	156	134	156	0.97
2	15	4.4e-05	0.0043	17.9	1.0	2	23	161	182	161	182	0.97
3	15	2.4e-05	0.0023	18.8	2.5	2	23	189	210	188	210	0.97
4	15	8.4e-06	0.0008	20.2	0.5	1	23	246	268	246	268	0.98
5	15	0.00023	0.022	15.6	0.7	1	23	274	296	274	296	0.98
6	15	1.6e-06	0.00015	22.5	2.4	1	23	302	324	302	324	0.97
7	15	9.6e-07	9.2e-05	23.2	1.8	1	23	330	352	330	352	0.96
8	15	3.6e-05	0.0035	18.2	0.6	1	23	358	380	358	380	0.98
9	15	3.4e-05	0.0032	18.3	6.8	1	23	386	408	386	408	0.97
10	15	9.4e-08	9e-06	26.3	1.0	1	23	413	435	413	435	0.97
11	15	0.00017	0.016	16.1	0.2	1	23	441	463	441	463	0.97
12	15	1.1e-06	0.0001	23.0	5.8	1	23	469	491	469	491	0.97
13	15	2.4e-06	0.00023	21.9	1.9	1	23	497	519	497	519	0.98
14	15	5.4e-06	0.00052	20.8	0.6	1	23	525	547	525	547	0.98
15	15	0.00038	0.036	15.0	2.3	1	23	553	576	553	576	0.97

Sequence Information

Coding Sequence: ATGGAAGATTATATGGTGAAAGATGAGCCAATGGATGCATTAAACATAGACAGTCAGGTTATGGACGAAAACATTGTAAGCGTTGTACTTAAAGAAGAACCCGGCGATAGATTTGATCCCGACTACATGGAGGACATCTGCTCCGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAATGAAGTTGACTTCTCTAACGAAATGGTAAAACTTGAATTAGATGGCGAGTCTAGCAGTCATCAGAATTGGACGGCTCAAATCGCTAATGCAAATTTATGCGACAAAGAAGATGGAGCTATGCAAAGATGTTTAGCGAATGCTAACTTTGCACAACCGCAAGATCCTGAGAAACATTCTGGCTTCTGCTCGAACGGGCAGCAAgcgaaattttataaaatacaaTGTTCCATTTGCAAGAAATGGTTTCTGAACAACGACTCGATGGTTACCCATCTGAGGATGCACTGCAGTGGAAACGAATGCGAGGTGTGCCagcaaaattttcaagataGCTCCAGTCTCCATGCACACATGTTAACGCACGTCGGCATGAGTCCACTGGAATGCAATGTTTGTCAAAAGCGATTCGCCTACAAGTGGTGTTTGCGCAGTCACATGCAAATGCACGTGTTGGAGAAGCCatacgacaacgacaacgacgcgCTGCAGCAAAGCTTTATGAAGAGGCCGGATTCTGAGAACGACCAGTCGATGAACACGGAGGAAAGAGTATTCGAATGCGACGTCTGTCGCGCAACGTTTAAAGGAAAATCTAGTCTGAACCGACATGTGCTTACTCACACCGAAGAGAGGCCGTATAAATGCGATATATGTTTTGCAATGTTTAGAGAAAAAGCGAAATTAAATATGCACATGACGCTGCACGGTGGGAGCAAACCGTTTAAATGCACCATGTGTCACAGAGCGTTCACACAGAAAACGGCGCTAAACAATCACATGCTGGCGCATAGCGGTGAGAAGCCACACGCCTGCAACATTTGTGAGAAAACGTACAAACGGAAATCGGAATTAATAAGGCATACGATGGTTCATACCGGCGAGAGACCGTACGAATGTAAGGAATGCCTAATGACGTTTCGAGAGAAAGCAAAATTAAATTCCCACATGCTGGTGCACACCGGCGAGAAACCACACGAATGTCATATATGTCATAAGGCGTGCGCGCGGAAGTCTGATCTTAATAGCCATATGTTGTTACATACCGGCGGTCAGTATGATTGCAAAGTATGCGACAAAATATTTACCCGCAAGTCGGATCTAAATCGGCATACTTTGATACACACGGGGGAGAAACCATTCGCTTGCGAATTATGCGACATGGCCTTCAGAGAAAAGACCAGACTGAATTCCCATATGCTTATACATACCGGCGACAGAAGACACGTCTGCCATATCTGTCAGAAAACATTTAAAGAGAAGTCTTCGTTAAGGAAACACATGCTGAGTCACACCGGTGATCGGCCATACGAATGTTACGTCTGTCACAAGGCATTCACCCAAAAGACCACGTTAAATAGCCACATATTGGTACACGCAGGGGAAAGACCATACGAGTGTAGTGCGTGTCAAAAGGTATTTAAGGACAGAGCTACATTGAAGAAGCATCTATCTGTGcacataaatgaaaaaactCACGAATGCCTGATTTGTTTAAAGAAATTTGCCCACAAAGCTGCGTTGAATAGTCATTTATCGACAAATCATACGTCCTAA
Protein Sequence: MEDYMVKDEPMDALNIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKVFLPIENNEVDFSNEMVKLELDGESSSHQNWTAQIANANLCDKEDGAMQRCLANANFAQPQDPEKHSGFCSNGQQAKFYKIQCSICKKWFLNNDSMVTHLRMHCSGNECEVCQQNFQDSSSLHAHMLTHVGMSPLECNVCQKRFAYKWCLRSHMQMHVLEKPYDNDNDALQQSFMKRPDSENDQSMNTEERVFECDVCRATFKGKSSLNRHVLTHTEERPYKCDICFAMFREKAKLNMHMTLHGGSKPFKCTMCHRAFTQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACELCDMAFREKTRLNSHMLIHTGDRRHVCHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPYECSACQKVFKDRATLKKHLSVHINEKTHECLICLKKFAHKAALNSHLSTNHTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00087361;
80% Identity: -