Basic Information

Insect: Trypoxylon attenuatum
Gene Symbol: -
Assembly: GCA_963989405.1
Location: OZ022496.1:5283256-5285181[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.21 19 6.1 0.2 2 23 135 156 134 156 0.96

2 15 6.8e-06 0.00064 20.2 0.8 2 23 161 182 160 182 0.98

3 15 2.5e-05 0.0024 18.4 3.1 2 23 189 210 188 210 0.97

4 15 6.4e-06 0.0006 20.2 1.2 1 23 242 264 242 264 0.98

5 15 0.00047 0.044 14.4 1.0 1 23 270 292 270 292 0.98

6 15 1.3e-06 0.00012 22.5 2.3 1 23 298 320 298 320 0.97

7 15 1.1e-06 0.0001 22.6 1.7 1 23 326 348 326 348 0.96

8 15 2.9e-05 0.0027 18.2 0.6 1 23 354 376 354 376 0.98

9 15 2.7e-05 0.0025 18.3 6.8 1 23 382 404 382 404 0.97

10 15 7.4e-08 7e-06 26.3 1.0 1 23 409 431 409 431 0.97

11 15 0.0001 0.0097 16.5 1.2 1 23 437 459 437 459 0.97

12 15 8.4e-07 7.9e-05 23.0 5.8 1 23 465 487 465 487 0.97

13 15 4.7e-06 0.00044 20.7 1.6 1 23 493 515 493 515 0.97

14 15 5.3e-06 0.00049 20.5 0.6 1 23 521 543 521 543 0.98

15 15 0.00045 0.043 14.4 2.5 1 23 549 572 549 572 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.21	19	6.1	0.2	2	23	135	156	134	156	0.96
2	15	6.8e-06	0.00064	20.2	0.8	2	23	161	182	160	182	0.98
3	15	2.5e-05	0.0024	18.4	3.1	2	23	189	210	188	210	0.97
4	15	6.4e-06	0.0006	20.2	1.2	1	23	242	264	242	264	0.98
5	15	0.00047	0.044	14.4	1.0	1	23	270	292	270	292	0.98
6	15	1.3e-06	0.00012	22.5	2.3	1	23	298	320	298	320	0.97
7	15	1.1e-06	0.0001	22.6	1.7	1	23	326	348	326	348	0.96
8	15	2.9e-05	0.0027	18.2	0.6	1	23	354	376	354	376	0.98
9	15	2.7e-05	0.0025	18.3	6.8	1	23	382	404	382	404	0.97
10	15	7.4e-08	7e-06	26.3	1.0	1	23	409	431	409	431	0.97
11	15	0.0001	0.0097	16.5	1.2	1	23	437	459	437	459	0.97
12	15	8.4e-07	7.9e-05	23.0	5.8	1	23	465	487	465	487	0.97
13	15	4.7e-06	0.00044	20.7	1.6	1	23	493	515	493	515	0.97
14	15	5.3e-06	0.00049	20.5	0.6	1	23	521	543	521	543	0.98
15	15	0.00045	0.043	14.4	2.5	1	23	549	572	549	572	0.96

Sequence Information

Coding Sequence: ATGGAAGGTTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCAGGTTATGGATGAGAATATTGTAAGTGTAGTCTTGAAAGAGGAACCTGGCGATAGATTCGACCCTGACTACATGGAGGAAATCTGTTCTGGGACTTTCGACAAGGTATTCTTACCTATCGAAAACAACGAAGTAGACTTCTCTAATGAAATGGTAAAATTGGAATTGGATGGTGAAGCAACCGCTCACCACGCATGGGCAGCACAGATCGCTGGTGCAAATCTTTGCGATAAGGACGATAGTACGATACAGAGATGTTTGGCCAATGCGAGCTTCATACAGGCACAAGAAGTTGAAAAGCATGCCACTTATTGTATGGCAGGACAGCAACAAAAATTCTACAAAATACAGTGTGCCATTTGCAAGAAATGGTTTCTGAATAACGATTCTATGGTAACGCACCTCCGATTGCATTGCAGTGGAAATCAGTGTGAGGTCTGCCAGCAAAATTTCCCAGATAACTCGAGTTTGCACGCACACATGTTGACGCACGTGGGAATGAGCCCGCTCGAATGTAGCCTCTGTCAGAAGAGATTCGCGTATAAATGGTGCTTGCGAAATCACATGCAAACGCACATGCCCGATAAATCGTATGATCCTGATGCGTTGCAACAGGCGTTTATGAGAAGACCCGATGAGATGCAATTAGCTAATCCAGCCGAAAGAGGATTCGAATGCAATATTTGTCACGCGACTTTcagagaaaaaatgaatctGAATCGTCACGTGCTTATACACACGGAAGAGCGACCGTACAAATGTGACATATGTTTCGCGCTTTTCCGAGAAAAGTCTAAGTTAAACATGCACATGTCTCTCCATACGGGAGTGAAACAATTCAAGTGTACAATGTGTCACAGATCCTTCGCGCAGAAAACAGCCCTGAACAATCACATGTTAGCGCACAGCGGCGAGAAACCACATGCGTGTAGTATATGCGAGAAGACGTATAAGAGAAAGTCCGAACTGATAAGACACACCATGGTACATACGGGTGAACGACCCTACGAATGTAAGGAGTGTCTAATGACTTTTCGTGAGAAAGCCAAGCTAAATTCTCACATGTTAGTCCACACGGGTGAAAAGCCTCACGAGTGTCACATATGTCACAAAGCGTGTGCGCGGAAATCGGACTTGAACAGTCATATGCTGTTGCACACCGGTGGCCAATACGATTGTAAAGTCTgcgataaaatatttacccGCAAGTCTGATCTAAACAGGCACACTTTGATTCACACTGGCGAGAAACCATTCGCCTGCCATCTCTGCGATATGGCGTTTAGAGAGAAGACCAGACTGAATTCCCACATGCTAATACACACTGGCGATCGTCGTCACGTGTGTCACATTTGTCAAAAGACGTTTAAGGAGAAATCGTCCCTGAGGAAACATATGCTGAGCCACACCGGAGACCGACCCTACGAATGTTACGTCTGTCACAAGGCTTTCACACAAAAAACAACATTGAACAGTCATATAGTGGTGCACGCGGGTGAAAGACCGTACGAGTGTAGTGCTTGTCAAAAGATATTTAAGGATAAAGCGTCTTTAAAGAAACATTTATCGGTGCATACGAACGAGAAAAATCACGAATGTCTCATCTGTTTAAAAAAGTTCGCACACAAGGCCGCGTTAAATAGTCATTTGACCACGACTCACACTTCCTAA
Protein Sequence: MEGFKVKDEPMDALAIDSQVMDENIVSVVLKEEPGDRFDPDYMEEICSGTFDKVFLPIENNEVDFSNEMVKLELDGEATAHHAWAAQIAGANLCDKDDSTIQRCLANASFIQAQEVEKHATYCMAGQQQKFYKIQCAICKKWFLNNDSMVTHLRLHCSGNQCEVCQQNFPDNSSLHAHMLTHVGMSPLECSLCQKRFAYKWCLRNHMQTHMPDKSYDPDALQQAFMRRPDEMQLANPAERGFECNICHATFREKMNLNRHVLIHTEERPYKCDICFALFREKSKLNMHMSLHTGVKQFKCTMCHRSFAQKTALNNHMLAHSGEKPHACSICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACHLCDMAFREKTRLNSHMLIHTGDRRHVCHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHIVVHAGERPYECSACQKIFKDKASLKKHLSVHTNEKNHECLICLKKFAHKAALNSHLTTTHTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: -
80% Identity: -