Basic Information

Insect: Andrena bicolor
Gene Symbol: -
Assembly: GCA_960531205.1
Location: OY482666.1:17095572-17097502[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.039 3.3 8.7 0.5 2 23 135 156 134 156 0.97

2 15 1.2e-05 0.00098 19.7 0.5 2 23 161 182 161 182 0.97

3 15 2.4e-05 0.002 18.8 2.5 2 23 189 210 188 210 0.97

4 15 8.4e-06 0.0007 20.2 0.5 1 23 248 270 248 270 0.98

5 15 0.00023 0.02 15.6 0.7 1 23 276 298 276 298 0.98

6 15 1.6e-06 0.00013 22.5 2.4 1 23 304 326 304 326 0.97

7 15 9.6e-07 8.1e-05 23.1 1.8 1 23 332 354 332 354 0.96

8 15 3.6e-05 0.0031 18.2 0.6 1 23 360 382 360 382 0.98

9 15 3.4e-05 0.0029 18.3 6.8 1 23 388 410 388 410 0.97

10 15 9.4e-08 7.9e-06 26.3 1.0 1 23 415 437 415 437 0.97

11 15 0.00017 0.014 16.1 0.2 1 23 443 465 443 465 0.97

12 15 1.1e-06 9e-05 23.0 5.8 1 23 471 493 471 493 0.97

13 15 2.4e-06 0.0002 21.9 1.9 1 23 499 521 499 521 0.98

14 15 5.4e-06 0.00046 20.8 0.6 1 23 527 549 527 549 0.98

15 15 0.00038 0.032 15.0 2.3 1 23 555 578 555 578 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.039	3.3	8.7	0.5	2	23	135	156	134	156	0.97
2	15	1.2e-05	0.00098	19.7	0.5	2	23	161	182	161	182	0.97
3	15	2.4e-05	0.002	18.8	2.5	2	23	189	210	188	210	0.97
4	15	8.4e-06	0.0007	20.2	0.5	1	23	248	270	248	270	0.98
5	15	0.00023	0.02	15.6	0.7	1	23	276	298	276	298	0.98
6	15	1.6e-06	0.00013	22.5	2.4	1	23	304	326	304	326	0.97
7	15	9.6e-07	8.1e-05	23.1	1.8	1	23	332	354	332	354	0.96
8	15	3.6e-05	0.0031	18.2	0.6	1	23	360	382	360	382	0.98
9	15	3.4e-05	0.0029	18.3	6.8	1	23	388	410	388	410	0.97
10	15	9.4e-08	7.9e-06	26.3	1.0	1	23	415	437	415	437	0.97
11	15	0.00017	0.014	16.1	0.2	1	23	443	465	443	465	0.97
12	15	1.1e-06	9e-05	23.0	5.8	1	23	471	493	471	493	0.97
13	15	2.4e-06	0.0002	21.9	1.9	1	23	499	521	499	521	0.98
14	15	5.4e-06	0.00046	20.8	0.6	1	23	527	549	527	549	0.98
15	15	0.00038	0.032	15.0	2.3	1	23	555	578	555	578	0.97

Sequence Information

Coding Sequence: ATGGAAGATTGTTTGGTGAAAGATGAGCCAATGGATGCATTAAACATAGACAGTCAGGTTATGGACGAAAACATTGTAAGCGTTGTACTTAAAGAGGAACCCGGCGATAGATTTGATCCCGACTACATGGAGGACATCTGCTCCGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAATGAAGTCGACTTCTCTAACGAAATGGTGAAGCTTGAGTTGGATGGCGAGTCTAGCAGTCATCAGAATTGGACCACTCAAATCGCCAATGCGAATTTATGCGACAAAGAGGATGGAGCTATGCAAAGATGTTTAGCGAACGCCAACTTCGCGCAGCCGCAAGATCCCGAGAAGCATTCTGGCTTCTGCTCGAACGGGCAGCAAGCGAAATTCTACAAAATACAATGCTCCATTTGCAAGAAATGGTTTCTGAACAACGACTCGATGGTTACCCATCTGAGGATGCACTGCAGCGGAAACGAATGCGAGGTGTGCCAGCAGAATTTTCCAGATAGCTCCAGCCTGCACGCGCACATGTTAACGCACGTCGGCATGAGTCCACTGGAATGCAACGTCTGTCAGAAGCGATTCGCTTACAAGTGGTGTTTGCGCAGCCACATGCAGATGCACGTGTTGGAGAAGCCGTACGACAACGAGAACGACAACGACGCCCTGCAGCAAAGTTTCATGAAGAGGCCGGACTCTGAGAACGACCAGTCGATGAACACGGAGGAGAGAGTATTCGAGTGCGACGTCTGTCGCGCAACGTTTAAAGGGAAATCTAGTCTGAACCGACATGTGCTTACTCACACCGAGGAAAGGCCGTACAAATGCGATATATGCTTCGCGATGTTTAGAGAAAAAGCGAAATTAAATATGCACATGACGCTGCACGGTGGTAGCAAACCGTTTAAATGCACCATGTGCCACAGGGCGTTCACGCAGAAAACGGCGCTAAACAATCACATGCTGGCGCACAGCGGCGAGAAGCCGCACGCCTGCAACATTTGTGAGAAAACGTACAAACGGAAGTCGGAATTGATAAGGCACACGATGGTCCATACCGGCGAGAGACCGTACGAGTGTAAGGAATGCCTGATGACGTTCCGGGAGAAAGCAAAATTAAATTCTCACATGCTGGTGCACACCGGCGAGAAACCGCACGAGTGTCATATATGTCATAAGGCGTGCGCGCGGAAGTCTGATCTTAATAGCCATATGCTGTTGCACACCGGCGGTCAGTACGATTGCAAAGTGTGCGACAAGATATTTACTCGCAAGTCGGATCTGAATCGGCACACTTTGATACACACCGGGGAGAAACCATTCGCCTGCGAATTATGCGACATGGCGTTCAGAGAAAAGACCAGGCTGAATTCCCATATGCTTATACATACCGGCGACAGAAGACACGTCTGCCATATCTGTCAGAAAACGTTCAAAGAGAAGTCTTCGTTGAGGAAACACATGCTGAGTCACACCGGTGACCGGCCATACGAATGTTACGTCTGTCACAAGGCGTTCACCCAAAAGACCACGTTAAATAGCCACATATTAGTACACGCAGGGGAAAGACCATACGAGTGTAGTGCGTGTCAAAAGGTATTTAAGGACAGAGCTACATTGAAGAAGCATCTATCTGTgcacataaatgaaaaaactcACGAATGCCTGATCTGTTTAAAGAAATTTGCCCATAAAGCTGCGTTGAATAGTCATTTATCGACAAATCATACGTCCTAA
Protein Sequence: MEDCLVKDEPMDALNIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKVFLPIENNEVDFSNEMVKLELDGESSSHQNWTTQIANANLCDKEDGAMQRCLANANFAQPQDPEKHSGFCSNGQQAKFYKIQCSICKKWFLNNDSMVTHLRMHCSGNECEVCQQNFPDSSSLHAHMLTHVGMSPLECNVCQKRFAYKWCLRSHMQMHVLEKPYDNENDNDALQQSFMKRPDSENDQSMNTEERVFECDVCRATFKGKSSLNRHVLTHTEERPYKCDICFAMFREKAKLNMHMTLHGGSKPFKCTMCHRAFTQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACELCDMAFREKTRLNSHMLIHTGDRRHVCHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPYECSACQKVFKDRATLKKHLSVHINEKTHECLICLKKFAHKAALNSHLSTNHTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00087361;
80% Identity: -