Basic Information

Insect: Nomada ruficornis
Gene Symbol: -
Assembly: GCA_951802695.1
Location: OX637852.1:16227008-16228889[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.02 2 9.5 0.6 2 23 135 156 134 156 0.97

2 15 3.3e-05 0.0034 18.2 1.4 2 23 161 182 160 182 0.98

3 15 2.2e-05 0.0023 18.8 2.5 2 23 189 210 188 210 0.97

4 15 2.5e-06 0.00026 21.8 2.2 1 23 243 265 243 265 0.98

5 15 0.00051 0.052 14.5 0.4 1 23 271 293 271 293 0.97

6 15 1.1e-06 0.00011 22.9 3.3 1 23 299 321 299 321 0.97

7 15 8.9e-07 9.1e-05 23.2 1.8 1 23 327 349 327 349 0.96

8 15 3.4e-05 0.0035 18.2 0.6 1 23 355 377 355 377 0.98

9 15 3.1e-05 0.0032 18.3 6.8 1 23 383 405 383 405 0.97

10 15 8.7e-08 8.9e-06 26.3 1.0 1 23 410 432 410 432 0.97

11 15 0.00014 0.015 16.2 0.2 1 23 438 460 438 460 0.97

12 15 2.5e-06 0.00026 21.7 4.6 1 23 466 488 466 488 0.95

13 15 2.2e-06 0.00023 21.9 1.9 1 23 494 516 494 516 0.98

14 15 8.9e-06 0.00092 20.0 0.7 1 23 522 544 522 544 0.98

15 15 0.00035 0.036 15.0 2.3 1 23 550 573 550 573 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.02	2	9.5	0.6	2	23	135	156	134	156	0.97
2	15	3.3e-05	0.0034	18.2	1.4	2	23	161	182	160	182	0.98
3	15	2.2e-05	0.0023	18.8	2.5	2	23	189	210	188	210	0.97
4	15	2.5e-06	0.00026	21.8	2.2	1	23	243	265	243	265	0.98
5	15	0.00051	0.052	14.5	0.4	1	23	271	293	271	293	0.97
6	15	1.1e-06	0.00011	22.9	3.3	1	23	299	321	299	321	0.97
7	15	8.9e-07	9.1e-05	23.2	1.8	1	23	327	349	327	349	0.96
8	15	3.4e-05	0.0035	18.2	0.6	1	23	355	377	355	377	0.98
9	15	3.1e-05	0.0032	18.3	6.8	1	23	383	405	383	405	0.97
10	15	8.7e-08	8.9e-06	26.3	1.0	1	23	410	432	410	432	0.97
11	15	0.00014	0.015	16.2	0.2	1	23	438	460	438	460	0.97
12	15	2.5e-06	0.00026	21.7	4.6	1	23	466	488	466	488	0.95
13	15	2.2e-06	0.00023	21.9	1.9	1	23	494	516	494	516	0.98
14	15	8.9e-06	0.00092	20.0	0.7	1	23	522	544	522	544	0.98
15	15	0.00035	0.036	15.0	2.3	1	23	550	573	550	573	0.97

Sequence Information

Coding Sequence: ATGGAAGATTTTAAAGTGAAAGATGAACCAATGGATGCGTTAAACATTGACAGTCAGGTTATGGACGAAAACATTGTAAGCGTTGTACTTAAAGAAGAACCAGGCGATAGATTTGATCCAGACTACATGGAGGACATCTGTTCCGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAACGAAGTTGACTTCTCTAATGAAATgGTAAAACTTGAACTGGATGGGGAATCCAGTAGTCACCAAAACTGGACTGCGCATATCACCAGCACAAATCTGTGCGACAAAGAAGATGGTTCTATGCAAAGGTGCATGCCAAGTGCAAACTTTGCGCAAGCGCACGACATAGAAAAGCATTCTGGATTCTGTCCGAACGGACAGCAAgcaaaattttataaaatacaatgcTCCATCTGCAAAAAATGGTTCTTGAACAACGATTCTATGGTTACTCATCTGAGAACGCACTGCAGCGGGAATCAGTGCGAGGTTTGTCAGCAAAATTTTCAGGATAACTCCAGTCTGCATGCTCACATGTTGACTCATGTTGGGATGAGTCCATTGGAGTGCAATGTCTGTCAAAAACGGTTTGCGTACAAATGGTGTTTACGTAGTCATATGCAGATGCACGTGCTGGAAAAACCGTACGACAACACGTTACAACAAGCCTTTACAAAGAGACCAGATTCTGAGCACGACCAATCAATGTGTACGGAGGGAGGGCTATTTGAATGCGATGTTTGTCATATGACgtttaaagaaaaatctaGTCTAAATCGGCACGTGCTTACTCACACAGAGCAAAGACTGTACAGATGCGATGTATGTTTTGCAGCATTTAGGGAAAAGGCAAAGTTGAATATGCATATGACGTTGCACGTGGGATGTAAACagttcaaatgtacaatgtgCCATAGGTCGTTCACACAAAAAACAGCACTAAACAATCATATGTTAGCGCATAGCGGTGAAAAGCCACACGCATGTAATATCTGCGAAAAAACGTACAAACGAAAGTCAGAGTTAATCAGGCATACAATGGTTCACACCGGTGAAAGACCGTACGAATGTAAGGAATGCTTGATGACTTTTCGGGAGAAAGCAAAATTAAACTCCCATATGCTGGTACATACTGGCGAGAAACCACACGAATGTCATATATGTCATAAGGCGTGTGCCCGAAAATCTGATCTTAATAGCCACATGCTGTTACATACCGGCGGTCAGTACGATTGCAAAGTTTGTGATAAAATCTTTACACGCAAGTCGGATTTGAATCGACATACTTTGATACATACCGGCGAGAAGCCATTTGCCTGCGAACTATGCGACATGGCTTTCAGAGAAAAGACCAGATTAAATTCTCATATGCTCGTACATACTGGCGATAAACGACATGCTTGTCATATTTGTCAGAAGACGTTCAAAGAGAAATCCTCGTTGCGGAAACATATGTTGGGTCACACAGGTGACAGGCCGTACGAATGCTATGTTTGTCATAAGGCTTTTACTCAAAAAACCACATTAAATAGTCATATATTAGTACACGCGGGAGAAAGACCGTACGAGTGTAGTGCGTGTCAGAAGATATTTAAGGACAAGGCAACATTGAAAAAACATTTGTCTGTGCACATAAACGAGAAAACTCACGAATGCCTGATCTGTTTAAAAAAGTTTGCCCATAAAGCTGCATTGAATAGTCATTTATCGACGAATCATACGTCCTAA
Protein Sequence: MEDFKVKDEPMDALNIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKVFLPIENNEVDFSNEMVKLELDGESSSHQNWTAHITSTNLCDKEDGSMQRCMPSANFAQAHDIEKHSGFCPNGQQAKFYKIQCSICKKWFLNNDSMVTHLRTHCSGNQCEVCQQNFQDNSSLHAHMLTHVGMSPLECNVCQKRFAYKWCLRSHMQMHVLEKPYDNTLQQAFTKRPDSEHDQSMCTEGGLFECDVCHMTFKEKSSLNRHVLTHTEQRLYRCDVCFAAFREKAKLNMHMTLHVGCKQFKCTMCHRSFTQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACELCDMAFREKTRLNSHMLVHTGDKRHACHICQKTFKEKSSLRKHMLGHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPYECSACQKIFKDKATLKKHLSVHINEKTHECLICLKKFAHKAALNSHLSTNHTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00087361;
80% Identity: -