Basic Information

Insect: Aphaenogaster miamiana
Gene Symbol: -
Assembly: GCA_003063725.1
Location: NJRN01000006.1:64179-66182[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.02 2.3 9.3 0.5 2 23 136 157 135 157 0.97

2 15 5.2e-06 0.00059 20.6 1.6 2 23 162 183 161 183 0.98

3 15 3.1e-06 0.00035 21.3 0.7 2 23 190 211 189 211 0.96

4 15 8e-06 0.00091 20.0 1.9 1 23 244 266 244 266 0.97

5 15 0.00062 0.071 14.1 1.2 1 23 273 295 273 295 0.96

6 15 1.9e-06 0.00021 22.0 2.2 1 23 301 323 301 323 0.97

7 15 8e-07 9.1e-05 23.2 1.8 1 23 329 351 329 351 0.96

8 15 3e-05 0.0034 18.2 0.6 1 23 357 379 357 379 0.98

9 15 2.8e-05 0.0032 18.3 6.8 1 23 385 407 385 407 0.97

10 15 7.8e-08 8.9e-06 26.3 1.0 1 23 412 434 412 434 0.97

11 15 8.2e-05 0.0093 16.8 0.3 1 23 440 462 440 462 0.97

12 15 1.6e-06 0.00018 22.2 5.6 1 23 468 490 468 490 0.96

13 15 2e-06 0.00023 21.9 1.9 1 23 496 518 496 518 0.98

14 15 1.1e-06 0.00013 22.7 0.6 1 23 524 546 524 546 0.98

15 15 0.0035 0.4 11.7 3.4 1 23 552 575 552 575 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.02	2.3	9.3	0.5	2	23	136	157	135	157	0.97
2	15	5.2e-06	0.00059	20.6	1.6	2	23	162	183	161	183	0.98
3	15	3.1e-06	0.00035	21.3	0.7	2	23	190	211	189	211	0.96
4	15	8e-06	0.00091	20.0	1.9	1	23	244	266	244	266	0.97
5	15	0.00062	0.071	14.1	1.2	1	23	273	295	273	295	0.96
6	15	1.9e-06	0.00021	22.0	2.2	1	23	301	323	301	323	0.97
7	15	8e-07	9.1e-05	23.2	1.8	1	23	329	351	329	351	0.96
8	15	3e-05	0.0034	18.2	0.6	1	23	357	379	357	379	0.98
9	15	2.8e-05	0.0032	18.3	6.8	1	23	385	407	385	407	0.97
10	15	7.8e-08	8.9e-06	26.3	1.0	1	23	412	434	412	434	0.97
11	15	8.2e-05	0.0093	16.8	0.3	1	23	440	462	440	462	0.97
12	15	1.6e-06	0.00018	22.2	5.6	1	23	468	490	468	490	0.96
13	15	2e-06	0.00023	21.9	1.9	1	23	496	518	496	518	0.98
14	15	1.1e-06	0.00013	22.7	0.6	1	23	524	546	524	546	0.98
15	15	0.0035	0.4	11.7	3.4	1	23	552	575	552	575	0.97

Sequence Information

Coding Sequence: ATGGAAGGTTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCAGGTTATGGATGAGAACATTGTGAGCGTCGTGCTTAAAGAGGAACCAGGTGACAGATTTGATCCCGACTACATGGAGGATATTTGCTCAGGCACTTTCGAGAAGGGCACTCTGTTTTTGCCTATCGAAAACAATGAGGTGGATTTCTCCAACGAAATGGTGAAGTTAGAGTTGGAAGGAGAATCAACCAGTCACCCGAACTGGTCGCAAATAGCGAATACTAATTTATGTGACAAGGAGGATGGTGTGATGCAGCGATGCTTGACCAATACGAATTTTATACAAACGCAAGAATCTGACAAGCATCATGGATTCTGTCAAAACGGGCAACAACCGAAATTTTACAAGATCCAATGCTCAATCTGCAAGAAATGGTTTCTAAACAATGATTCCATGGTGTCGCATCTAAGGACACACTGTAGTGGAAATCAATGTGAGGTTtgtcaacaaaattttaccgaCAACTCTACCCTACATGCCCACATGTTAACTCACGTTGGAATGAGTCCATTAGAGTGCAACATCTGTCAAAAAAGATTTGCTTATAAGTGGAGCTTAAGAAGCCACATGCAATTGCATGTTTTGGATAAACCGTACGATTGCGATGCATTGCAGCAGGCTTTTATGAAGCGAGCCGGTATGAATGAACAGATAATGCAGATGGAGGACAGGCCCTTTGAATGTGACGTGTGTCACGTAACGTTCAAGGAGAAGATTAATTTGAATCGACACATGTCCAACCACACGAATGCGGATAAACCCTATAAATGTACGGTCTGTTTCGAAGCGTTCAAGGAAAAGGCGAAATTGAACATGCATTTGTCGTTCCACACAGGAAACAAGCATTTCAAGTGTACATTGTGTCATAGATCGTTTGCCCAGAAAACTGCGCTCAACAATCATATGCTGGCGCATAGCGGCGAGAAACCGCACGCGTGTAACATTTGTGAGAAAACATACAAGAGAAAATCGGAATTGATTAGGCATACTATGGTTCACACTGGGGAAAGACCGTATGAGTGTAAAGAGTGTTTGATGACTTTCCGAGAGAAGGCTAAACTGAATTCCCACATGCTGGTCCACACGGGCGAGAAACCACACGAGTGTCACATCTGTCACAAGGCATGCGCAAGGAAATCGGATTTGAACAGTCACATGTTGTTACATACTGGTGGTCAATACGATTGCAAGGTCTGCGACAAAATCTTCACCAGGAAATCGGATCTGAATCGGCACACTCTAATACACACCGGTGAAAAACCGTTTGCGTGCAATATGTGCGACATGGCATTCAGGGAGAAGACGCGATTGAACTCGCATATGATCATACACACAGGCGATAAGCGACACGCGTGTCATATCTGCCAGAAGACGTTCAAGGAAAAGTCATCGTTGAGGAAACATATGTTAAGTCACACCGGTGACAGGCCGTACGAATGTTATGTGTGTCACAAAGCTTTCACGCAGAAGACCACGTTGAACAGCCACATCCTGGTTCACGCCGGTGAGAGACCATTTGAATGTAGTACTTGTCAAAAGATATTCAAAGACAAAGCGGCGTTGAAAAAACACTTGTTGGTACACGTTAACGAAAAAACTCACGAATGTcttatttgtatgaaaaaattCGCGCATAAAACAGCATTGAATAGTCACCTGTCCACGAATCACATATCCTAA
Protein Sequence: MEGFKVKDEPMDALAIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKGTLFLPIENNEVDFSNEMVKLELEGESTSHPNWSQIANTNLCDKEDGVMQRCLTNTNFIQTQESDKHHGFCQNGQQPKFYKIQCSICKKWFLNNDSMVSHLRTHCSGNQCEVCQQNFTDNSTLHAHMLTHVGMSPLECNICQKRFAYKWSLRSHMQLHVLDKPYDCDALQQAFMKRAGMNEQIMQMEDRPFECDVCHVTFKEKINLNRHMSNHTNADKPYKCTVCFEAFKEKAKLNMHLSFHTGNKHFKCTLCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACNMCDMAFREKTRLNSHMIIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPFECSTCQKIFKDKAALKKHLLVHVNEKTHECLICMKKFAHKTALNSHLSTNHIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_01228514;
80% Identity: iTF_00129171;