Basic Information

Insect: Colletes gigas
Gene Symbol: -
Assembly: GCA_013123115.1
Location: WUUM01000004.1:351668-354267[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.029 2.1 8.8 0.5 2 23 93 114 92 114 0.97

2 15 2.2e-05 0.0016 18.6 1.3 2 23 119 140 118 140 0.98

3 15 1.3e-05 0.00092 19.4 2.5 2 23 147 168 146 168 0.97

4 15 8e-06 0.00058 20.0 1.0 2 23 203 224 202 224 0.97

5 15 9.3e-05 0.0068 16.6 0.8 1 23 230 252 230 252 0.98

6 15 1.2e-06 8.7e-05 22.6 2.3 1 23 258 280 258 280 0.97

7 15 7.2e-07 5.2e-05 23.3 1.8 1 23 286 308 286 308 0.96

8 15 2.7e-05 0.002 18.3 0.6 1 23 314 336 314 336 0.98

9 15 2.5e-05 0.0019 18.4 6.8 1 23 342 364 342 364 0.97

10 15 7e-08 5.1e-06 26.5 1.0 1 23 369 391 369 391 0.97

11 15 0.00012 0.0091 16.2 0.2 1 23 397 419 397 419 0.97

12 15 1.4e-06 0.0001 22.3 5.6 1 23 425 447 425 447 0.96

13 15 1.8e-06 0.00013 22.0 1.9 1 23 453 475 453 475 0.98

14 15 6.7e-06 0.00049 20.2 0.9 1 23 481 503 481 503 0.98

15 15 0.00028 0.021 15.1 2.3 1 23 509 532 509 532 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.029	2.1	8.8	0.5	2	23	93	114	92	114	0.97
2	15	2.2e-05	0.0016	18.6	1.3	2	23	119	140	118	140	0.98
3	15	1.3e-05	0.00092	19.4	2.5	2	23	147	168	146	168	0.97
4	15	8e-06	0.00058	20.0	1.0	2	23	203	224	202	224	0.97
5	15	9.3e-05	0.0068	16.6	0.8	1	23	230	252	230	252	0.98
6	15	1.2e-06	8.7e-05	22.6	2.3	1	23	258	280	258	280	0.97
7	15	7.2e-07	5.2e-05	23.3	1.8	1	23	286	308	286	308	0.96
8	15	2.7e-05	0.002	18.3	0.6	1	23	314	336	314	336	0.98
9	15	2.5e-05	0.0019	18.4	6.8	1	23	342	364	342	364	0.97
10	15	7e-08	5.1e-06	26.5	1.0	1	23	369	391	369	391	0.97
11	15	0.00012	0.0091	16.2	0.2	1	23	397	419	397	419	0.97
12	15	1.4e-06	0.0001	22.3	5.6	1	23	425	447	425	447	0.96
13	15	1.8e-06	0.00013	22.0	1.9	1	23	453	475	453	475	0.98
14	15	6.7e-06	0.00049	20.2	0.9	1	23	481	503	481	503	0.98
15	15	0.00028	0.021	15.1	2.3	1	23	509	532	509	532	0.97

Sequence Information

Coding Sequence: ATGGAGGACATCTGTTCCGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAACGAAGTTGACTTTTCTAATGAAatggtaaaattagaattagatGGTGAATCTAGCACTCATCAGAACTGGACAACCCAACTTGCTAACACGAATTTATGCGACAAAGAAGATGGAGCTATGCAAAGATGCCTGACGAACGCAAATTTTGCCCAAGTGCAAGATACCGAAAAACattctaatttttgttcaaacgGGCAGCAGCCcaagttttataaaatacaatgttCAATTTGCAAGAAATGGTTTTTAAACAATGATTCGATGGTTACTCATTTGAGAATGCACTGCAGTGGTAGTCAATGCGAGGTGTGCCAGCAAAATTTTCAGGACAGTTCCAGTTTACATGCTCACATGTTAACACACGTTGGTATGAGCCCTTTGGAATGCAATGTCTGCCAAAAACGATTCGCTTACAAGTGGTGTTTGCGTAATCATATGCAAATGCACGTACTGGAGAAACCATACGATAACGACGCGTTACAACAAACGTTTATGAAGCGGCTGGATTCCGAAAACGACCAGTCGATGAGCGGTGAAGATAGAATAATTGAGTGCGATGTTTGCCACGCGacgtttaaagaaaaatctagTCTGAATCGGCATGTGCTTACTCACACAGAAGAGAGGCCGTATAAATGCGACATATGCTTTGCAACGTTTAGGGAAAAGGCAAAACTGAATATGCATATGACGCTGCATGGCGGGAATAAACAGTTTAAATGTACAATGTGTCATAGATCGTTTGCGCAAAAAACGGCGCTGAACAATCACATGCTGGCTCACAGCGGCGAAAAGCCCCATGCATGCAATATCTGTGAGAAAACGTACAAACGAAAGTCGGAATTAATAAGGCATACGATGGTCCATACCGGCGAAAGACCGTACGAGTGCAAAGAATGCCTAATGACATTTCGAGagaaagcaaaattaaattctcacATGCTTGTGCATACAGGTGAGAAACCACACGAGTGTCACATATGTCACAAGGCGTGTGCGCGGAAATCCGATCTTAATAGCCACATGTTACTACACACCGGCGGCCAATACGATTGTAAAGTttgcgataaaatatttactcgtaAGTCGGATTTAAATCGGCACACGTTGATACACACGGGCGAGAAACCATTTGCTTGCGAGCTGTGCGACATGGCCTTTAGAGAAAAGACTAGACTGAATTCTCATATGCTTATACACACCGGCGACAAAAGACACGCGTGTCACATTTGTCAGAAAACATTTAAAGAGAAGTCTTCGTTACGGAAACATATGTTGAGTCACACCGGCGACAGACCATACGAATGTTACGTGTGTCACAAAGCATTTACCCAAAAAACGACATTAAACAGCCACATATTGGTACACGCAGGGGAGAGACCATACGAGTGTAGTGCGtgtcagaaaatatttaaggaCAAAGCAACATTGAAAAAGCATTTGTCAATGCACATAAACGAAAAAACTCACGAATGCCtgatctgtttaaaaaaatttgcccaCAAAGCTGCGTTAAATAGTCATTTATCAACAAATCATACGTCTTAA
Protein Sequence: MEDICSGTFEKVFLPIENNEVDFSNEMVKLELDGESSTHQNWTTQLANTNLCDKEDGAMQRCLTNANFAQVQDTEKHSNFCSNGQQPKFYKIQCSICKKWFLNNDSMVTHLRMHCSGSQCEVCQQNFQDSSSLHAHMLTHVGMSPLECNVCQKRFAYKWCLRNHMQMHVLEKPYDNDALQQTFMKRLDSENDQSMSGEDRIIECDVCHATFKEKSSLNRHVLTHTEERPYKCDICFATFREKAKLNMHMTLHGGNKQFKCTMCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACELCDMAFREKTRLNSHMLIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPYECSACQKIFKDKATLKKHLSMHINEKTHECLICLKKFAHKAALNSHLSTNHTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00087361;
80% Identity: iTF_00360354;