Basic Information

Insect: Trachymyrmex zeteki
Gene Symbol: -
Assembly: GCA_001594055.1
Location: NW:2932404-2934869[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.068 4.5 7.2 0.8 2 23 142 163 141 163 0.97

2 15 2.6e-06 0.00017 21.1 1.5 2 23 168 189 167 189 0.98

3 15 2.3e-06 0.00015 21.3 0.7 2 23 196 217 195 217 0.96

4 15 2.5e-06 0.00016 21.2 1.8 1 23 250 272 250 272 0.98

5 15 0.00086 0.057 13.2 0.5 1 20 279 298 279 301 0.95

6 15 1.4e-06 9.2e-05 22.0 2.2 1 23 307 329 307 329 0.97

7 15 6e-07 4e-05 23.1 1.8 1 23 335 357 335 357 0.96

8 15 2.3e-05 0.0015 18.2 0.6 1 23 363 385 363 385 0.98

9 15 3.8e-05 0.0025 17.5 6.8 1 23 391 413 391 413 0.97

10 15 5.9e-08 3.9e-06 26.3 1.0 1 23 418 440 418 440 0.97

11 15 6.2e-05 0.004 16.8 0.3 1 23 446 468 446 468 0.97

12 15 1.2e-06 7.9e-05 22.2 5.7 1 23 474 496 474 496 0.96

13 15 1.6e-06 0.00011 21.8 1.9 1 23 502 524 502 524 0.98

14 15 1.8e-05 0.0012 18.5 1.7 1 23 530 552 530 552 0.98

15 15 0.005 0.33 10.8 3.2 1 23 558 581 558 581 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.068	4.5	7.2	0.8	2	23	142	163	141	163	0.97
2	15	2.6e-06	0.00017	21.1	1.5	2	23	168	189	167	189	0.98
3	15	2.3e-06	0.00015	21.3	0.7	2	23	196	217	195	217	0.96
4	15	2.5e-06	0.00016	21.2	1.8	1	23	250	272	250	272	0.98
5	15	0.00086	0.057	13.2	0.5	1	20	279	298	279	301	0.95
6	15	1.4e-06	9.2e-05	22.0	2.2	1	23	307	329	307	329	0.97
7	15	6e-07	4e-05	23.1	1.8	1	23	335	357	335	357	0.96
8	15	2.3e-05	0.0015	18.2	0.6	1	23	363	385	363	385	0.98
9	15	3.8e-05	0.0025	17.5	6.8	1	23	391	413	391	413	0.97
10	15	5.9e-08	3.9e-06	26.3	1.0	1	23	418	440	418	440	0.97
11	15	6.2e-05	0.004	16.8	0.3	1	23	446	468	446	468	0.97
12	15	1.2e-06	7.9e-05	22.2	5.7	1	23	474	496	474	496	0.96
13	15	1.6e-06	0.00011	21.8	1.9	1	23	502	524	502	524	0.98
14	15	1.8e-05	0.0012	18.5	1.7	1	23	530	552	530	552	0.98
15	15	0.005	0.33	10.8	3.2	1	23	558	581	558	581	0.95

Sequence Information

Coding Sequence: ATGGAAGGTTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCAGGTTATGGTAAACTTTTTGATTGTCGTGCTTAAGGAGGAACCAGGCGACAGAACATTTGATCCAGACTACATGGAGGATATTTGCTCAGGCACTTTCGAGAAGGGCACCCTGTTTTTGCCTATCGAAAACAATGAGGTGGATTTCTCCAACGAAATGgagctttgtgaatttttacagGTGAAGTTAGAGTTAGAAGGAGAATCGACCAGTCATCAGAACTGGTCGCAAATAGCAAATACTAATTTATGTGACAAGGAGGATGTGATGCAACGATGCTTGactaatacaaattttatacaaacgcAAGACTCTGACAAGCATCATGGATTCTGTCAAAATGGGCAACAACCGAAATTCTACAAGATCCAATGCTCAATGTGCAAGAAATGGTTTCTGAATAATGATTCCATGGTAACGCATCTAAAAACGCACTGTAGTGGAAATCAATGTGAGGTCtgtcaacaaaattttactgaTAACTCTAGCCTGCATGCCCACATGTTAACTCACGTTGGAATGAGTCCATTAGAGTGCAACATCTGTCAAAAAAGATTCGCTTATAAATGGAGCTTAAGGAGCCACATGCAATTACATGTATTAGATAAACCTTACGATTGTGATGCGTTGCAGCAGGCTTTTATGAAGCGAGCTGGTATGAACGAACAGATAATGCCAATGGAAGACAGGCCCTTTGAATGTGATGTGTGTCACATGACGTTTAaggagaaaattaatttgaatcgaCACATGACCATTCACGCGAATACGGACAAACCCTATAAATGCACGATTTGTTTCGAAGCGTTCAAGGAGAAGGCGAAATTGAACATGCATTTGCCACTCCATACGGGAAACAAACATTTCAAGTGTACATTGTGTCATAGATCGTTCGCCCAAAAAACCGCGCTCAACAATCATATGCTAGCACATAGCGGTGAGAAACCACACGCGTGTAACATTTGTGAAAAAACGTACAAGAGAAAATCAGAATTAATTAGGCATACTATGGTTCATACTGGTGAGAGACCATACGAGTGTAAAGAATGCTTAATGACTTTTCGAGAAAAAGCCAAATTGAATTCCCATATGTTGGTCCACACGGGTGAGAAACCACATGAGTGTCACGTCTGTCACAAGGCATGTGCAAGAAAGTCGGATTTGAACAGTCACATGTTATTACACACTGGCGGTCAATACGATTGCAAGGTTTGCGACAAAATCTTCACCAGGAAATCGGATCTGAATCGGCATACTCTAATACACACCGGTGAGAAACCGTTTGCGTGCAATATGTGCGACATGGCGTTCAGGGAGAAGACGCGATTAAACTCGCACATGATCATACATACAGGAGATAAGCGACACGCGTGTCACATCTGTCAGAAGACATTCAAGGAAAAGTCATCGTTGAAAAAACATATGTTAAGTCACACCGGTGACAGACCGTACGAATGTTATGTGTGTCACAAAGCTTTCACGCAGAAGACCACGTTAAATAGCCACATCCTGATTCACGCTGGTGAGAGACCATTTGAATGTAGTACTTGTcaaaaaatatgcaaagaTAAAGCAGCGTTGAAAAAGCACTTATTGGTGCACGTTAACGAAAAAACTCACGAATGTCttatttgtatgaaaaaattcGCCCATAAAACAGCATTAAATAGTCACCTGTCCTCAAATCACATATCCTAA
Protein Sequence: MEGFKVKDEPMDALAIDSQVMVNFLIVVLKEEPGDRTFDPDYMEDICSGTFEKGTLFLPIENNEVDFSNEMELCEFLQVKLELEGESTSHQNWSQIANTNLCDKEDVMQRCLTNTNFIQTQDSDKHHGFCQNGQQPKFYKIQCSMCKKWFLNNDSMVTHLKTHCSGNQCEVCQQNFTDNSSLHAHMLTHVGMSPLECNICQKRFAYKWSLRSHMQLHVLDKPYDCDALQQAFMKRAGMNEQIMPMEDRPFECDVCHMTFKEKINLNRHMTIHANTDKPYKCTICFEAFKEKAKLNMHLPLHTGNKHFKCTLCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHVCHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACNMCDMAFREKTRLNSHMIIHTGDKRHACHICQKTFKEKSSLKKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILIHAGERPFECSTCQKICKDKAALKKHLLVHVNEKTHECLICMKKFAHKTALNSHLSSNHIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_01228514;
80% Identity: -