Basic Information

Insect: Pseudomyrmex dendroicus
Gene Symbol: -
Assembly: GCA_014825645.1
Location: QVNZ01023221.1:4283-6196[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.033 3.8 8.7 0.5 2 23 136 157 135 157 0.97

2 15 8e-06 0.00093 20.0 0.9 2 23 162 183 161 183 0.98

3 15 1.1e-06 0.00012 22.8 0.7 2 23 190 211 189 211 0.96

4 15 7.2e-06 0.00084 20.2 2.1 1 23 244 266 244 266 0.97

5 15 6.4e-05 0.0075 17.2 1.0 1 23 272 294 272 294 0.98

6 15 1.9e-06 0.00022 22.0 2.2 1 23 300 322 300 322 0.97

7 15 1.1e-06 0.00013 22.8 1.1 1 23 328 350 328 350 0.96

8 15 3.1e-05 0.0036 18.2 0.6 1 23 356 378 356 378 0.98

9 15 2.9e-05 0.0034 18.3 6.8 1 23 384 406 384 406 0.97

10 15 8e-08 9.3e-06 26.3 1.0 1 23 411 433 411 433 0.97

11 15 6.6e-05 0.0078 17.1 0.4 1 23 439 461 439 461 0.97

12 15 1.6e-06 0.00019 22.2 5.6 1 23 467 489 467 489 0.96

13 15 1.2e-06 0.00014 22.7 2.4 1 23 495 517 495 517 0.98

14 15 4.4e-05 0.0052 17.7 2.1 2 23 524 545 523 545 0.96

15 15 0.0024 0.28 12.2 3.4 1 23 551 574 551 574 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.033	3.8	8.7	0.5	2	23	136	157	135	157	0.97
2	15	8e-06	0.00093	20.0	0.9	2	23	162	183	161	183	0.98
3	15	1.1e-06	0.00012	22.8	0.7	2	23	190	211	189	211	0.96
4	15	7.2e-06	0.00084	20.2	2.1	1	23	244	266	244	266	0.97
5	15	6.4e-05	0.0075	17.2	1.0	1	23	272	294	272	294	0.98
6	15	1.9e-06	0.00022	22.0	2.2	1	23	300	322	300	322	0.97
7	15	1.1e-06	0.00013	22.8	1.1	1	23	328	350	328	350	0.96
8	15	3.1e-05	0.0036	18.2	0.6	1	23	356	378	356	378	0.98
9	15	2.9e-05	0.0034	18.3	6.8	1	23	384	406	384	406	0.97
10	15	8e-08	9.3e-06	26.3	1.0	1	23	411	433	411	433	0.97
11	15	6.6e-05	0.0078	17.1	0.4	1	23	439	461	439	461	0.97
12	15	1.6e-06	0.00019	22.2	5.6	1	23	467	489	467	489	0.96
13	15	1.2e-06	0.00014	22.7	2.4	1	23	495	517	495	517	0.98
14	15	4.4e-05	0.0052	17.7	2.1	2	23	524	545	523	545	0.96
15	15	0.0024	0.28	12.2	3.4	1	23	551	574	551	574	0.97

Sequence Information

Coding Sequence: ATGGAAGATTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCAGGTTATGGACGAGAATATTGTGAGCGTTGTGCTTAAGGAAGAACCAGGTGACAAATTTGATCCTGACTACATGGAGGATATTTGCTCTGGTACTTTTGAGAAGGGCGCTTTATTTTTGCCTATCGAAAACAATGAGGTGGATTTTTCCAATGAAATGGTAAAGCTAGAGTTGGAAGGTGAATCTACAAGTCATCAAAACTGGACAGGTTCATTAGGGAATAATTTGTGCGATAAAGAAGATGGTGTAATGCAACGATGTTTAGCTAATGCAAATTTCATACAAACACAGGATTCTGACAAGCATCATGGATTTTGTCAAAATGGACAGCAACCGAAATTTTATAAAATACAATGTTCTATTTGTAAGAAATGGTTTCTGAACAATGATTCAATGGTGACGCATCTAAGAATGCATTGTAGTGGAAGTCAGTGTGAGGTTTGTCAGCAAACCTTCCCCGATAATACCAGCTTGCATGCTCACATGTTAACTCACGTCGGAATGAGTCCGCTAGAGTGTAACATCTGCCAAAAAAGATTTGCTTACAAGTGGAACTTGAGAAGTCACATGCAATTGCACATATTGGATAAGCCATATGATTGCGATGCTTTGCAACAGGCTTTTATGAAGCGTGCGAGTTTGAACGAGCAGATGATGCACATGGAAGAAAGACCTTTTGAATGTGACATGTGTCACATGACGTTCAAAGAGAAAATTAATCTGAATCGGCATATGGTTAGCCACACGATAGATAGACCCTACAAATGCTCGATTTGTTATGAAGGATTCAAAGAGAAGACAAAACTAAATCTGCATATGTCTATTCATACCGGGAACAAGAATTTCAAGTGTACATTGTGTCATAGATCATTTGCTCAGAAAACGGCACTCAATAATCATATGCTGGCGCACAGCGGTGAGAAGCCACACGCGTGTAACATATGTGAGAAAACATATAAGAGGAAATCGGAATTAATCAGACACGCTATGGTTCACACCGGCGAGAGACCGTACGAGTGCAAAGAGTGTTTGATGACTTTCCGCGAAAAGGCTAAATTGAATTCCCACATGTTGGTCCATACTGGTGAAAAACCGCACGAATGTCATATTTGTCACAAGGCGTGCGCGCGAAAATCTGACTTGAACAGTCACATGCTTTTGCATACTGGCGGTCAGTACGACTGTAAGGTTTGCGACAAGATTTTCACTAGAAAGTCGGATCTGAACAGACATACTCTCATACACACCGGTGAAAAGCCGTACGCGTGCACTATGTGCGACATGGCGTTTAGAGAGAAAACAAGATTGAACTCGCACATGCTCATACACACGGGTGATAAACGGCACGCGTGTCACATATGTCAGAAAACGTTCAAGGAAAAATCATCGTTGAGAAAACATATGTTAAGTCACACCGGCGACAGGCCGTACGAGTGCTACGTATGTCACAAGGCTTTTACGCAAAAGACTACACTGAACAGTCACATGTTGGTTCATGCTATCGAGAGACCTTTAGAATGTTGTACTTGTCAAAAAATATTCAAAGATAAGGCGGGGTTGAAAAAACATCTATTGATGCATGTTAACGAGAAAACCCACGAATGTCTTATTTGTATGAAAAAATTCGCCCACAAAACAGCATTAAATAATCACCTATCCACAAGCCACATATCCTAA
Protein Sequence: MEDFKVKDEPMDALAIDSQVMDENIVSVVLKEEPGDKFDPDYMEDICSGTFEKGALFLPIENNEVDFSNEMVKLELEGESTSHQNWTGSLGNNLCDKEDGVMQRCLANANFIQTQDSDKHHGFCQNGQQPKFYKIQCSICKKWFLNNDSMVTHLRMHCSGSQCEVCQQTFPDNTSLHAHMLTHVGMSPLECNICQKRFAYKWNLRSHMQLHILDKPYDCDALQQAFMKRASLNEQMMHMEERPFECDMCHMTFKEKINLNRHMVSHTIDRPYKCSICYEGFKEKTKLNLHMSIHTGNKNFKCTLCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHAMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPYACTMCDMAFREKTRLNSHMLIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHMLVHAIERPLECCTCQKIFKDKAGLKKHLLMHVNEKTHECLICMKKFAHKTALNNHLSTSHIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00899004;
80% Identity: -