Basic Information

Insect: Nylanderia fulva
Gene Symbol: -
Assembly: GCA_005281655.1
Location: NW:569403-573538[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.062 5 7.5 0.5 2 23 147 168 146 168 0.97

2 15 1.6e-06 0.00013 21.9 0.8 2 23 173 194 172 194 0.98

3 15 2.6e-05 0.002 18.2 1.9 2 23 201 222 200 222 0.96

4 15 3.3e-06 0.00026 21.0 2.2 1 23 254 276 254 276 0.99

5 15 0.016 1.3 9.4 0.6 1 20 283 302 283 305 0.94

6 15 3.9e-06 0.00032 20.7 2.1 1 23 312 334 312 334 0.97

7 15 6.8e-07 5.4e-05 23.1 1.8 1 23 340 362 340 362 0.96

8 15 2.6e-05 0.0021 18.2 0.6 1 23 368 390 368 390 0.98

9 15 2.4e-05 0.0019 18.3 6.8 1 23 396 418 396 418 0.97

10 15 6.6e-08 5.3e-06 26.3 1.0 1 23 423 445 423 445 0.97

11 15 5.7e-05 0.0045 17.1 0.4 1 23 451 473 451 473 0.97

12 15 1.4e-06 0.00011 22.2 5.6 1 23 479 501 479 501 0.96

13 15 1.2e-06 9.4e-05 22.4 2.1 1 23 507 529 507 529 0.98

14 15 1e-06 8.3e-05 22.5 0.7 1 23 535 557 535 557 0.98

15 15 0.0014 0.12 12.6 2.4 1 23 563 586 563 586 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.062	5	7.5	0.5	2	23	147	168	146	168	0.97
2	15	1.6e-06	0.00013	21.9	0.8	2	23	173	194	172	194	0.98
3	15	2.6e-05	0.002	18.2	1.9	2	23	201	222	200	222	0.96
4	15	3.3e-06	0.00026	21.0	2.2	1	23	254	276	254	276	0.99
5	15	0.016	1.3	9.4	0.6	1	20	283	302	283	305	0.94
6	15	3.9e-06	0.00032	20.7	2.1	1	23	312	334	312	334	0.97
7	15	6.8e-07	5.4e-05	23.1	1.8	1	23	340	362	340	362	0.96
8	15	2.6e-05	0.0021	18.2	0.6	1	23	368	390	368	390	0.98
9	15	2.4e-05	0.0019	18.3	6.8	1	23	396	418	396	418	0.97
10	15	6.6e-08	5.3e-06	26.3	1.0	1	23	423	445	423	445	0.97
11	15	5.7e-05	0.0045	17.1	0.4	1	23	451	473	451	473	0.97
12	15	1.4e-06	0.00011	22.2	5.6	1	23	479	501	479	501	0.96
13	15	1.2e-06	9.4e-05	22.4	2.1	1	23	507	529	507	529	0.98
14	15	1e-06	8.3e-05	22.5	0.7	1	23	535	557	535	557	0.98
15	15	0.0014	0.12	12.6	2.4	1	23	563	586	563	586	0.97

Sequence Information

Coding Sequence: ATGGAAGGTTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCAGGTTATGGATGAGAACATTGTGAGCGTCGTGCTTAAGGAGGAACCAGGTGACAGATTTGATCCAGACTACATGGAGGATATTTGCTCCAGCACTTTCGACAAGGGCACTTTATTTTTGCCTATCGAAAACAATGAGGTGGACTTCTCCAACGAAATGGTAAAGTTAGAGCTGGAAGGGGAATCTACCAGCCATCAGAACTGGGCGGCTCAGATAGCGAGCGCGAATTTGTGCGACAAGGAGGATGGTGTAATGCAACGATGTTTGGCGAACGCGCAGAATTTTATACAGGCGCAGGACCCGGACaagcagcaacagcaacagcagcagcagcagcagcacgGGTTCTGTCAGAACGGTCAGCAGCCCAAGTTTTACAAAATACAATGCTCAATTTGCAAGAAATGGTTTCTGAACAATGACTCTATGGTGACGCATCTGAAGATGCACTGCAGCGGCAGCCAGTGCGAGGTCTGCCAGCAGAGCTTTTCCGACAACGGCAGCCTGCACGCCCACATGTTGACTCACGTCGGCATGAGCCCTTTAGAGTGTCACATCTGTCAGAAGAGATTCGCCTACAAGTTAAACCTGCGAAATCACGTGCAGCTTCACATGCTGGACAAATCGTACGACTGTGACGCGCTGCAGCAGGCCTTCATGAAGCGGGCGGGCCTGAACACCGAGCAGATGTTGGACGACCGATTCTACGAGTGCGACGTCTGTCACGTGACGTTCAAGGAGAAGCTGAATCTGAACCGGCACATGTCCACGCACAACACGACGGACAGGCCGCATAAGTGCGCGGTCTGCTTCGAGGCGTTCAAGGAGAAGGCGAAGCTGAACATGCATCTGCCGCTGCACGCGGTCAGCAACAAACATTTCAAGTGCACCCTCTGTCACAGATCCTTCGCCCAGAAGACGGCGCTGAGCAATCACATGCTCGCCCACAGCGGCGAGAAGCCGCACGCCTGCAACATCTGCGAGAAGACGTACAAGAGGAAGTCGGAGCTGATCAGGCACACGATGGTGCACACGGGCGAGAGACCGTACGAGTGCAAGGAGTGCCTGATGACCTTCCGGGAGAAGGCGAAGCTGAACTCGCACATGCTCGTGCACACGGGCGAAAAACCGCACGAGTGCCACATCTGTCACAAGGCCTGCGCGCGCAAATCCGACCTGAACTCGCACATGCTGCTGCACACGGGCGGCCAGTACGACTGCAAGGTCTGCGACAAGATCTTCACGAGGAAGTCTGATCTGAACAGGCACACCCTGATACACACCGGCGAGAAGCCGTTCGCCTGCAACATGTGCGACATGGCGTTCCGGGAGAAGACGAGACTGAACTCGCACATGCTCATACACACTGGGGACAAGCGGCACGCCTGCCACATCTGCCAGAAGACGTTCAAGGAGAAGTCTTCGTTGCGGAAACACATGTTAAGTCACACCGGGGACCGGCCGTACGAGTGCTACGTGTGTCACAAGGCCTTCACCCAGAAGACGACGTTGAACAGTCACATTATGGTACACGCGGGCGAGAGACCCTTCGAGTGCACCACCTGTCAGAAGATATTCAAGGACAAGGCGGCGCTGAAGAAGCACCTCGCGATGCACGTTAACGAGAAGACCCACGAATGTCTTATATGTATGAAGAAGTTCGCTCACAAAGCGGCGCTAAATAGTCACCTGTCCACGAGCCACATATCCTAA
Protein Sequence: MEGFKVKDEPMDALAIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSSTFDKGTLFLPIENNEVDFSNEMVKLELEGESTSHQNWAAQIASANLCDKEDGVMQRCLANAQNFIQAQDPDKQQQQQQQQQQHGFCQNGQQPKFYKIQCSICKKWFLNNDSMVTHLKMHCSGSQCEVCQQSFSDNGSLHAHMLTHVGMSPLECHICQKRFAYKLNLRNHVQLHMLDKSYDCDALQQAFMKRAGLNTEQMLDDRFYECDVCHVTFKEKLNLNRHMSTHNTTDRPHKCAVCFEAFKEKAKLNMHLPLHAVSNKHFKCTLCHRSFAQKTALSNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACNMCDMAFREKTRLNSHMLIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHIMVHAGERPFECTTCQKIFKDKAALKKHLAMHVNEKTHECLICMKKFAHKAALNSHLSTSHIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00730223;
80% Identity: -