Amar016263.1
Basic Information
- Insect
- Andrena marginata
- Gene Symbol
- -
- Assembly
- GCA_963932335.1
- Location
- OZ010663.1:34755038-34756935[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.039 3.2 8.7 0.5 2 23 135 156 134 156 0.97 2 15 4.5e-05 0.0037 17.9 1.0 2 23 161 182 161 182 0.97 3 15 2.4e-05 0.002 18.8 2.5 2 23 189 210 188 210 0.97 4 15 8.5e-06 0.0007 20.2 0.5 1 23 246 268 246 268 0.98 5 15 0.00024 0.02 15.6 0.7 1 23 274 296 274 296 0.98 6 15 1.6e-06 0.00013 22.5 2.4 1 23 302 324 302 324 0.97 7 15 9.8e-07 8e-05 23.2 1.8 1 23 330 352 330 352 0.96 8 15 3.7e-05 0.003 18.2 0.6 1 23 358 380 358 380 0.98 9 15 3.5e-05 0.0028 18.3 6.8 1 23 386 408 386 408 0.97 10 15 9.6e-08 7.9e-06 26.3 1.0 1 23 413 435 413 435 0.97 11 15 0.00017 0.014 16.1 0.2 1 23 441 463 441 463 0.97 12 15 1.1e-06 8.9e-05 23.0 5.8 1 23 469 491 469 491 0.97 13 15 2.5e-06 0.0002 21.9 1.9 1 23 497 519 497 519 0.98 14 15 5.5e-06 0.00045 20.8 0.6 1 23 525 547 525 547 0.98 15 15 0.00038 0.032 15.0 2.3 1 23 553 576 553 576 0.97
Sequence Information
- Coding Sequence
- ATGGAAGATTATTTGGTGAAAGATGAGCCAATGGATGCATTAAACATAGACAGTCAGGTTATGGACGAAAACATTGTAAGCGTTGTACTTAAAGAAGAACCCGGCGATAGATTTGATCCCGACTACATGGAGGACATCTGCTCCGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAATGAAGTCGACTTCTCTAACGAAATGGTGAAGCTTGAATTAGATGGCGAGTCTAGCAGTCATCAGAATTGGACCACTCAGATCGCTAATGCGAATTTATGCGACAAAGAAGATGGAGCTATGCAAAGATGTTTAGCGAATGCCAACTTCGCACAGCCGCAAGATCCTGAGAAACATTCTGGCTTCTGCCCGAACGGGCAGCAAGcgaaattttacaaaatacaaTGTTCCATTTGCAAGAAATGGTTTCTGAACAACGACTCGATGGTTACCCATCTGAGGATGCACTGCAGCGGAAACGAATGCGAGGTGTGCcagcaaaattttcaagatagcTCCAGCCTCCACGCGCACATGTTAACGCACGTCGGTATGAGCCCACTGGAATGCAATGTTTGTCAGAAGCGATTCGCTTACAAGTGGTGCTTGCGCAGCCACATGCAAATGCACGTGCTGGAGAAGCCgtacgacaacgacaacgacgccCTGCAGCAAAGCTTTATGAAGAGGCCGGATTCTGAGAACGACCAGTCGATGAACACGGAGGAAAGAGTATTCGAATGCGACGTCTGTCGCGCAACGTTTAAAGGGAAATCTAGTCTGAACCGACATGTGCTCACTCACACCGAGGAAAGGCCGTATAAATGCGATATATGTTTTGCAATGTTTAGAGAAAAAGCGAAATTAAATATGCACATGACGCTGCACGGTGGTAGCAAACCGTTTAAATGCACCATGTGTCACAGGGCGTTCACACAGAAAACTGCGCTAAACAATCACATGCTGGCGCACAGCGGTGAGAAACcgcacgcctgcaatatttgtGAGAAAACGTACAAACGGAAATCGGAATTAATAAGGCACACGATGGTCCATACCGGCGAGAGGCCGTACGAATGTAAGGAATGCCTAATGACGTTCCGAGAGAAAGCAAAATTAAATTCCCACATGCTGGTGCACACGGGCGAGAAACCACACGAATGTCATATATGTCATAAGGCGTGCGCGCGGAAGTCTGATCTTAATAGCCATATGTTGTTGCACACCGGCGGTCAGTACGATTGCAAAGTGTGCGACAAGATATTTACTCGCAAGTCGGATCTGAATCGGCATACTTTGATACACACGGGGGAGAAGCCGTTCGCTTGCGAATTATGCGACATGGCCTTCAGAGAAAAGACCAGACTGAATTCCCATATGCTTATACATACCGGCGACAGAAGACACGTCTGCCATATCTGTCAGAAAACATTTAAAGAGAAGTCTTCGTTAAGGAAACACATGCTGAGTCACACCGGTGACCGGCCATACGAATGTTACGTCTGTCACAAGGCGTTCACCCAAAAGACCACGTTAAATAGCCACATATTAGTACACGCAGGGGAAAGACCATACGAGTGTAGTGCGTGTCAAAAGGTATTTAAGGACAGAGCTACATTGAAGAAGCATCTATCTGTGCACATAAATGAAAAAACTCACGAATGCCTgatctgtttaaaaaaatttgcccACAAAGCTGCGTTGAATAGTCATTTATCGACAAATCATACGTCCTAA
- Protein Sequence
- MEDYLVKDEPMDALNIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKVFLPIENNEVDFSNEMVKLELDGESSSHQNWTTQIANANLCDKEDGAMQRCLANANFAQPQDPEKHSGFCPNGQQAKFYKIQCSICKKWFLNNDSMVTHLRMHCSGNECEVCQQNFQDSSSLHAHMLTHVGMSPLECNVCQKRFAYKWCLRSHMQMHVLEKPYDNDNDALQQSFMKRPDSENDQSMNTEERVFECDVCRATFKGKSSLNRHVLTHTEERPYKCDICFAMFREKAKLNMHMTLHGGSKPFKCTMCHRAFTQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACELCDMAFREKTRLNSHMLIHTGDRRHVCHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPYECSACQKVFKDRATLKKHLSVHINEKTHECLICLKKFAHKAALNSHLSTNHTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01539746;
- 90% Identity
- iTF_00085603; iTF_00088233; iTF_00086555; iTF_01169314; iTF_01067747; iTF_01066404; iTF_01067078; iTF_01065711; iTF_01070511; iTF_01068432; iTF_01069812; iTF_01069111; iTF_00963976; iTF_00225377; iTF_00360354; iTF_00361058; iTF_00223331; iTF_00226052; iTF_00303268; iTF_00215845; iTF_00218565; iTF_00222662; iTF_00963334; iTF_00684297; iTF_00964617; iTF_00625642; iTF_00228811; iTF_00228108; iTF_00684908; iTF_00226733; iTF_00220721; iTF_00224017; iTF_00227409; iTF_00229489; iTF_01417842; iTF_00232115; iTF_00862035; iTF_00219252; iTF_00221396; iTF_00222036; iTF_00224693; iTF_00215158; iTF_00233367; iTF_00761111; iTF_00214520; iTF_00230169; iTF_00962649; iTF_00216539; iTF_00232731; iTF_01122587; iTF_01123195; iTF_00734076; iTF_00982428; iTF_00983100; iTF_00217214; iTF_00231454; iTF_00118143; iTF_00219935; iTF_00230815; iTF_00141345; iTF_00141959; iTF_00140729; iTF_00142590; iTF_01539746; iTF_01071139; iTF_00862722; iTF_00966148; iTF_00762696; iTF_00184073; iTF_00763372; iTF_00024749; iTF_00866157; iTF_00860561; iTF_00863409; iTF_00864114; iTF_00861336; iTF_00866840; iTF_00865469; iTF_00961966; iTF_01419125; iTF_00873926; iTF_01424511; iTF_00864778; iTF_01420397; iTF_01418476; iTF_01419768; iTF_01421054; iTF_00084723; iTF_00089002;
- 80% Identity
- -