Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: -
Assembly: GCA_017141365.1
Location: JAEVLP010004366.1:25665-27652[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.034 5.1 8.7 0.5 2 23 137 158 136 158 0.97

2 15 8.9e-07 0.00013 23.1 1.3 2 23 163 184 162 184 0.98

3 15 3.2e-06 0.00048 21.3 0.7 2 23 191 212 190 212 0.96

4 15 8.5e-06 0.0013 20.0 1.9 1 23 245 267 245 267 0.97

5 15 0.0031 0.46 11.9 0.4 1 20 274 293 274 296 0.95

6 15 1e-06 0.00015 22.9 3.3 1 23 302 324 302 324 0.97

7 15 8.5e-07 0.00013 23.2 1.8 1 23 330 352 330 352 0.96

8 15 3.2e-05 0.0048 18.2 0.6 1 23 358 380 358 380 0.98

9 15 1.9e-05 0.0029 18.9 4.6 1 23 386 408 386 408 0.97

10 15 8.3e-08 1.2e-05 26.3 1.0 1 23 413 435 413 435 0.97

11 15 8.7e-05 0.013 16.8 0.3 1 23 441 463 441 463 0.97

12 15 1.7e-06 0.00025 22.2 5.6 1 23 469 491 469 491 0.96

13 15 2.2e-06 0.00032 21.9 1.9 1 23 497 519 497 519 0.98

14 15 1.6e-06 0.00024 22.3 0.8 1 23 525 547 525 547 0.98

15 15 0.0037 0.55 11.7 3.4 1 23 553 576 553 576 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.034	5.1	8.7	0.5	2	23	137	158	136	158	0.97
2	15	8.9e-07	0.00013	23.1	1.3	2	23	163	184	162	184	0.98
3	15	3.2e-06	0.00048	21.3	0.7	2	23	191	212	190	212	0.96
4	15	8.5e-06	0.0013	20.0	1.9	1	23	245	267	245	267	0.97
5	15	0.0031	0.46	11.9	0.4	1	20	274	293	274	296	0.95
6	15	1e-06	0.00015	22.9	3.3	1	23	302	324	302	324	0.97
7	15	8.5e-07	0.00013	23.2	1.8	1	23	330	352	330	352	0.96
8	15	3.2e-05	0.0048	18.2	0.6	1	23	358	380	358	380	0.98
9	15	1.9e-05	0.0029	18.9	4.6	1	23	386	408	386	408	0.97
10	15	8.3e-08	1.2e-05	26.3	1.0	1	23	413	435	413	435	0.97
11	15	8.7e-05	0.013	16.8	0.3	1	23	441	463	441	463	0.97
12	15	1.7e-06	0.00025	22.2	5.6	1	23	469	491	469	491	0.96
13	15	2.2e-06	0.00032	21.9	1.9	1	23	497	519	497	519	0.98
14	15	1.6e-06	0.00024	22.3	0.8	1	23	525	547	525	547	0.98
15	15	0.0037	0.55	11.7	3.4	1	23	553	576	553	576	0.97

Sequence Information

Coding Sequence: ATGGAAGGTTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCAGGTTATGGATGAGAACATTGTGAGCGTCGTGCTTAAGGAGGAACCAGGTGAAGCCAGATTTGATCCCGACTACATGGAGGATATTTGCTCTGGTACTTTTGAGAAAGGCGCTCTGTTTTTGCCTATCGAAAACAATGATGTGGATTTTTCCAATGAGATGGTGAAGTTGGAGCTGGAAGGAGAATCAACCAGTCACCAAAACTGGTCACAAATAGCAAATACTAATTTATGTGACAAAGAGGATGGTGTGATGCAACGATGTTTGACTAATACAAATTTCATACAAACGCAAGATTCTGATAAGCATCATGGATTCTGCCAAAATGGACAACAACCGAAGTTTTATAAAATCCAATGCTCAATCTGCAAGAAATGGTTTCTGAACAATGATTCCATGGTGACACATCTAAGGATGCACTGTAGTGGAAATCAATGCGAGGTTTGTCAACAAAGTTTTTCTGACAATTCTAGCCTGCATGCCCACATGTTAACTCACGTTGGAATGAGTCCATTAGAATGCAACATCTGTCAAAAAAGATTTGCTTATAAATGGAGCTTAAGAAGTCACATGCAGTTGCATGTATTGGATAAACCATATGATTGCGATGCGTTACAACAGGCTTTTATGAAGCGAGCCGGTATGAATGAGCAAATAATACAAATGGAGGATAGGCCCTTCGAATGTGATGTCTGCCATGTGACGTTTAAGGAGAAGATTAACTTGAATCGACACATGTCCAATCACACGAATGCAGACAAACTCTATAGATGCACGGTCTGTTTCGAGGCGTTTAAGGAAAAGGCAAAACTGAATATGCATTTGCCGCTGCATGCAGGGAACAAGCATTTCAAGTGTACGATGTGTCATAGATCGTTCACCCAGAAAACTGCGCTCAATAATCACATGCTGGCGCACAGTGGCGAGAAACCGCATGCCTGTAACATTTGCGAGAAAACGTACAAAAGAAAATCAGAATTGATTAGGCATACTATGGTTCACACCGGTGAGAGACCATACGAATGTAAAGAGTGCTTGATGACTTTCCGAGAGAAGGCCAAACTGAATTCCCACATGCTGGTCCATACGGGTGAGAAACCGCACGAATGTCAAATCTGTCATAAAGCATGTGCGAGGAAATCGGATTTGAACAGTCACATGTTGTTACACACCGGCGGTCAATACGATTGCAAAGTTTGCGACAAGATTTTCACCAGGAAGTCTGATCTGAATCGGCACACTCTAATACATACCGGTGAAAAACCGTTTGCGTGCAATATGTGCGACATGGCGTTCCGAGAAAAGACAAGATTAAATTCGCACATGATCATACACACAGGCGATAAGCGGCATGCGTGTCACATTTGCCAGAAGACGTTCAAGGAAAAGTCGTCGTTGAGGAAACATATGTTAAGTCACACCGGTGACAGACCGTATGAATGTTACGTGTGTCATAAAGCTTTCACGCAGAAGACCACGTTGAACAGCCACATCCTGGTTCATGCTGGTGAGAGACCATTTGAATGTAGTACTTGTCAAAAAATATTCAAAGACAAAGCGGCTTTGAAAAAGCACTTGTCGGTGCACGTTAATGAAAAAACACACGAATGTCTTATTTGTATGAAAAAATTCGCCCATAAAACAGCATTGAATAGTCACCTATCCACGAATCACATATCCTAA
Protein Sequence: MEGFKVKDEPMDALAIDSQVMDENIVSVVLKEEPGEARFDPDYMEDICSGTFEKGALFLPIENNDVDFSNEMVKLELEGESTSHQNWSQIANTNLCDKEDGVMQRCLTNTNFIQTQDSDKHHGFCQNGQQPKFYKIQCSICKKWFLNNDSMVTHLRMHCSGNQCEVCQQSFSDNSSLHAHMLTHVGMSPLECNICQKRFAYKWSLRSHMQLHVLDKPYDCDALQQAFMKRAGMNEQIIQMEDRPFECDVCHVTFKEKINLNRHMSNHTNADKLYRCTVCFEAFKEKAKLNMHLPLHAGNKHFKCTMCHRSFTQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECQICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACNMCDMAFREKTRLNSHMIIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPFECSTCQKIFKDKAALKKHLSVHVNEKTHECLICMKKFAHKTALNSHLSTNHIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_01228514;
80% Identity: -