Cruf033537.1
Basic Information
- Insect
- Cerceris ruficornis
- Gene Symbol
- -
- Assembly
- GCA_963989415.1
- Location
- OZ022526.1:17897668-17899597[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.035 6.2 8.7 0.5 2 23 137 158 136 158 0.97 2 15 3.1e-05 0.0054 18.3 1.3 2 23 163 184 162 184 0.97 3 15 2.2e-05 0.0038 18.8 2.0 2 23 191 212 190 212 0.97 4 15 5e-05 0.0087 17.6 1.3 1 23 245 267 245 267 0.98 5 15 0.0022 0.38 12.5 0.3 1 23 273 295 273 295 0.96 6 15 1.4e-06 0.00025 22.5 2.3 1 23 301 323 301 323 0.97 7 15 8.7e-07 0.00015 23.2 1.8 1 23 329 351 329 351 0.96 8 15 3.3e-05 0.0058 18.2 0.6 1 23 357 379 357 379 0.98 9 15 3.1e-05 0.0054 18.3 6.8 1 23 385 407 385 407 0.97 10 15 8.5e-08 1.5e-05 26.3 1.0 1 23 412 434 412 434 0.97 11 15 0.00015 0.027 16.1 0.2 1 23 440 462 440 462 0.97 12 15 1.7e-06 0.00031 22.2 5.6 1 23 468 490 468 490 0.96 13 15 2.2e-06 0.00039 21.9 1.9 1 23 496 518 496 518 0.98 14 15 8.3e-06 0.0015 20.1 0.3 1 23 524 546 524 546 0.98 15 15 0.00034 0.06 15.0 2.3 1 23 552 575 552 575 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGTTGTAAGGTGAAAGATGAACCGATGGATGTATTAGCCATAGACAGTCAGGTTATGgACGAAAACATTGTAAGCGTCGTACTTAAGGAAGAACCCGGCGATAGATTCGATACTGACTACATGGAGGACATCTGCTCCGGGACCTTCGAGAAGGTATTTTTACCTATCGAACAGAACGAAGTGGACTTCTCCAATGAGATGGTGAAACTGGAATTGGACGGAGAGTCGAGTGGCCATCAAAATTGGACGGCGCAAATCGCCGGGGGCAATCTATGCGATAAGGAAGATGGCGTTATGCAAAGATGCTTGACCAATTCCAATTCCAATTTTGTACAAACGCAAGAAACGGAAAAACATTCTGGATTTTGTTCGAACGGGCAACAgccgaaattttacaaaatacaatGTTCCATTTGCAAGAAGTGGTTCCTAAATAACGATTCGATGGTCACACATTTGAGAATGCACTGCAATGGCGATCGTTGCGAGGTGTGCCAACAAAATTTTCAAGACAACTCGAGCCTCCACGCTCACATGCTGACGCACGTCGGCATGAGCCCCCTGGAGTGCAACGTGTGTCAAAAGCGGTTCGCTTATAAGTGGTGCTTGCGTAGTCATATGCAAATACACACGTCGGAAAAACCGTACGAGAACGATGCACTGCAGCAAGCGTACGCGAAGAGACCGGACCAGGGGAACGATCGAGGAAATTTAGAAGAGAGGGCTTTCGAGTGCGACGTTTGTCACGCGACGttcaaagaaaaattgaatttgaatcgACACGTCCTCTCGCATACCGAGGAACGCCCTTACAAATGCGACGTATGTTTCGCGGCATTTCGAGAGAAAGCTAAATTGAATATGCACACGGCGCTTCATACGGGAAACAAGCAGTTCAAATGTACCATGTGTCATAGATCGTTCGCGCAGAAGACGGCGCTGAATAATCACATGCTGGCGCATAGCGGCGAAAAGCCGCACGCGTGCAATATCTGCGAGAAAACGTACAAGAGAAAGTCCGAATTGATCAGGCACACAATGGTGCACACCGGAGAAAGACCGTACGAATGCAAAGAGTGCCTGATGACATTCCGGGAGAAGGCTAAGTTGAACTCGCACATGCTGGTACATACCGGCGAAAAACCACACGAGTGTCACATCTGTCACAAAGCGTGCGCTCGAAAATCCGATTTGAACAGTCACATGCTCCTGCACACCGGAGGTCAATACGATTGCAAAGTATGCGACAAAATTTTTACACGAAAATCGGATTTGAACAGGCACACTCTGATACATACCGGCGAGAAGCCGTTTGCCTGCGAATTGTGCGATATGGCGTTCAGAGAGAAGACTAGATTGAATTCGCACATGCTCATACATACCGGCGACAAGAGGCACGCGTGTCACATTTGTCAGAAGACGTTCAAGGAGAAGTCATCGTTGCGGAAGCATATGTTAAGTCACACCGGCGACAGGCCGTACGAATGTTACGTATGTCACAAGGCGTTCACGCAAAAAACCACGTTGAACAGTCACATATTGGTACACGCGGGGGAGAGACCTTACGAGTGTAGTGCGTGTCAAAAGATATTTAAGGACAAAGCGGCACTGAAGAAACATTTGTCGGTGCACGTTAATGAAAAAAATCACGAATGTCTTATTTGTTTAAAGAAATTTGCCCACAAGGCTGCCTTGAACAGCCATTTGTCGACGAATCACACGTCCTAA
- Protein Sequence
- MEGCKVKDEPMDVLAIDSQVMDENIVSVVLKEEPGDRFDTDYMEDICSGTFEKVFLPIEQNEVDFSNEMVKLELDGESSGHQNWTAQIAGGNLCDKEDGVMQRCLTNSNSNFVQTQETEKHSGFCSNGQQPKFYKIQCSICKKWFLNNDSMVTHLRMHCNGDRCEVCQQNFQDNSSLHAHMLTHVGMSPLECNVCQKRFAYKWCLRSHMQIHTSEKPYENDALQQAYAKRPDQGNDRGNLEERAFECDVCHATFKEKLNLNRHVLSHTEERPYKCDVCFAAFREKAKLNMHTALHTGNKQFKCTMCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACELCDMAFREKTRLNSHMLIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPYECSACQKIFKDKAALKKHLSVHVNEKNHECLICLKKFAHKAALNSHLSTNHTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01539746;
- 90% Identity
- -
- 80% Identity
- -