Hsal004760.1
Basic Information
- Insect
- Harpegnathos saltator
- Gene Symbol
- -
- Assembly
- GCA_003227715.1
- Location
- NW:176555-179663[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.025 1.6 8.8 0.5 2 23 91 112 90 112 0.97 2 14 2.1e-06 0.00014 21.6 1.3 2 23 117 138 116 138 0.98 3 14 2e-05 0.0013 18.5 2.3 2 23 145 166 144 166 0.96 4 14 1.2e-05 0.00079 19.2 1.6 1 23 199 221 199 221 0.98 5 14 2.1e-06 0.00014 21.6 1.5 1 23 253 275 253 275 0.97 6 14 6.2e-07 3.9e-05 23.3 1.8 1 23 281 303 281 303 0.96 7 14 2.3e-05 0.0015 18.3 0.6 1 23 309 331 309 331 0.98 8 14 2.2e-05 0.0014 18.4 6.8 1 23 337 359 337 359 0.97 9 14 6e-08 3.9e-06 26.5 1.0 1 23 364 386 364 386 0.97 10 14 0.00011 0.0069 16.2 0.2 1 23 392 414 392 414 0.97 11 14 3e-06 0.00019 21.1 7.8 1 23 420 442 420 442 0.96 12 14 1.5e-06 9.8e-05 22.0 2.0 1 23 448 470 448 470 0.98 13 14 3.3e-06 0.00021 21.0 0.9 1 23 476 498 476 498 0.98 14 14 0.0018 0.12 12.4 3.4 1 23 504 527 504 527 0.97
Sequence Information
- Coding Sequence
- ATGGAGGATATTTGCTCAGGTACTTTCGAGAAGGTATTTCTGCCTATCGAAAACAATGAAGTGGATTTCTCTAATGAAATGGTGAAATTAGAATTGGAAGGAGAATCTACCAGTCATCATAATTGGACAGCGCAAATAAATGCTAATTTATGCGATAAGGAAGATAGTGTAATGCAACGATGTTTGGCTAACACAAATTTTCTACAAGCACAAGACCCTGAGAAGCACGGATTTTGTCAAAACGGGCAACAAgcgaaattttataaaatacaatgCTCAATTTGTAAGAAGTGGTTTCTGAATAATGATTCCATGGTAACACATTTAAGGATGCATTGTAGTGGAAGTCAGTGTGAAGTTTGTCAGCAGAATTTTTCTGATAACTCCAGTTTGCATGCCCACATGTTGACTCACGTTGGAATGAGCCCGTTAGAATGCAACATCTGTCAGAAACGATTCGCTTATAAATGGTGCTTACGAAGTCATATGCAACTACATGTGTTGGATAAGCCATACGATTGCGATGCGTTGCAGCAAGCTTTTATGAAACGAGCAGGTATGAACGATCAGATGATGCATATGGAAGAAAGACCTTTTGAATGTGATGTATGCCATGCATCGTTTAAGGagaaaattactttaaatcGGCACATGTCCAGCCATGTTGGAGATAGATCCTATAAATGTGAAATTGCGGCATTTAGAGAAAAGGCAAAATTAAATATGCATATGCCGCTTCATATGGGAAACAAACAATTCAAATGTACATTGTGTCACAGAGCATTTGCTCAAAAAACAGCACTCAACAATCATATGCTGGCCCATAGTGGTGAGAAACCACACGCATGCAACATTTGTGAGAAAACATACAAAAGAAAATCAGAATTAATTAGGCATACTATGGTGCACACCGGCGAGAGACCATACGAATGTAAAGAATGCTTGATGACTTTTCGTGAAAAAGCCAAATTAAATTCCCATATGCTGGTTCATACAGGGGAAAAACCACACGAATGTCATATTTGTCACAAGGCATGCGCACGGAAATCAGATTTAAACAGCCACATGTTGCTGCATACCGGCGGCCAGTATGATTGCAAAGTCTGCGATAAGATTTTTACCAGGAAATCTGATCTGAATAGACACACTCTAATACATACTGGTGAGAAACCGTTCGCCTGCGATTTATGCGACATGGCATTCAGGGAAAAGACTAGATTGAACTCACATATGCTTATACATACTGGCGATAAGCGACACGCCTGTCACATTTGCCACAAAACATTCAAAGAGAAGTCGTCGTTGAGGAAACACATGTTGAGCCACACTGGTGACAGACCGTACGAATGCTATGTGTGTCACAAAGCTTTCACACAGAAGACTACTTTGACCAGCCATATTCTGGTTCATGCTGGTGAGAGACCTTTTGAGTGCAGttcttgtcaaaaaatattcaaagacAAAGCAgcgttgaaaaaacacttATCGATGCACGTTAATGAAAAAACTCACGAATGTCTTATCTGTATGAAAAAATTCGCCCATAAGACAGCATTAAATAATCACTTGTCCACGAGCCACATATCCTAA
- Protein Sequence
- MEDICSGTFEKVFLPIENNEVDFSNEMVKLELEGESTSHHNWTAQINANLCDKEDSVMQRCLANTNFLQAQDPEKHGFCQNGQQAKFYKIQCSICKKWFLNNDSMVTHLRMHCSGSQCEVCQQNFSDNSSLHAHMLTHVGMSPLECNICQKRFAYKWCLRSHMQLHVLDKPYDCDALQQAFMKRAGMNDQMMHMEERPFECDVCHASFKEKITLNRHMSSHVGDRSYKCEIAAFREKAKLNMHMPLHMGNKQFKCTLCHRAFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACDLCDMAFREKTRLNSHMLIHTGDKRHACHICHKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLTSHILVHAGERPFECSSCQKIFKDKAALKKHLSMHVNEKTHECLICMKKFAHKTALNNHLSTSHIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01539746;
- 90% Identity
- iTF_00452713;
- 80% Identity
- -