Basic Information

Insect: Polistes canadensis
Gene Symbol: -
Assembly: GCA_001313835.1
Location: NW:70564-73707[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.6 7.3e+03 -3.7 0.0 27 44 162 179 160 182 0.83

2 12 0.21 9.5e+02 -0.9 0.1 24 52 187 215 185 216 0.85

3 12 1.7e-06 0.0079 15.4 0.0 12 44 231 263 226 268 0.86

4 12 5.2e-05 0.24 10.6 0.1 21 45 268 292 266 300 0.88

5 12 0.0077 36 3.7 0.1 21 44 324 347 320 355 0.85

6 12 0.19 8.9e+02 -0.8 0.0 21 45 352 376 347 383 0.84

7 12 0.019 88 2.4 0.2 21 44 380 403 377 407 0.76

8 12 0.45 2.1e+03 -2.0 0.0 27 45 413 431 412 440 0.79

9 12 0.043 2e+02 1.3 0.0 21 44 435 458 433 465 0.87

10 12 0.03 1.4e+02 1.8 0.1 25 44 467 486 461 492 0.88

11 12 0.16 7.2e+02 -0.5 0.0 22 44 492 514 488 519 0.85

12 12 0.0024 11 5.3 0.0 21 46 519 544 516 552 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.6	7.3e+03	-3.7	0.0	27	44	162	179	160	182	0.83
2	12	0.21	9.5e+02	-0.9	0.1	24	52	187	215	185	216	0.85
3	12	1.7e-06	0.0079	15.4	0.0	12	44	231	263	226	268	0.86
4	12	5.2e-05	0.24	10.6	0.1	21	45	268	292	266	300	0.88
5	12	0.0077	36	3.7	0.1	21	44	324	347	320	355	0.85
6	12	0.19	8.9e+02	-0.8	0.0	21	45	352	376	347	383	0.84
7	12	0.019	88	2.4	0.2	21	44	380	403	377	407	0.76
8	12	0.45	2.1e+03	-2.0	0.0	27	45	413	431	412	440	0.79
9	12	0.043	2e+02	1.3	0.0	21	44	435	458	433	465	0.87
10	12	0.03	1.4e+02	1.8	0.1	25	44	467	486	461	492	0.88
11	12	0.16	7.2e+02	-0.5	0.0	22	44	492	514	488	519	0.85
12	12	0.0024	11	5.3	0.0	21	46	519	544	516	552	0.90

Sequence Information

Coding Sequence: ATGGAAGGTTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCAGGTTATGGACGAAAATATTGTAAGCGTTGTACTTAAAGAAGAACCTGGAGATAGATTTGATCCCGACTACATGGAGGATATATGCTCTGGTACTTTCGAGAAGGTATTTTTACCTATCGAAAACAGCGAAGTGGACTTTTCCAATGAAATGGTAAAATTGGAGTTGGAAGGAGAAACAAGTGGACACCCAAACTGGACGGCACAGATCACAGCGGCGAACCTTTGCGAAAAAGAAGATGGTATATCGCATAGGTGTTTAAGTGCAGCAGACTTTATGCAAGCTCAAGACGCGGAGAAACATCCGGTATTTTGTGCAAACGGACAGCAGCCAAAATTTTATAAGATTCAATGTTCCATCTGCAAGAAATGGTTTCTTAACAACGATTCTATGGTCACACATTTAAGAATGCATTGTAATGGGAATCAGTGCGAGGTTTGTCAGCAAAACTTTCAAGACAGTTCCAGCTTGCATGCGCATATGTTAACACACGTCGGTATGAGTCCGCTGGAGTGCAATGTTTGCCAGAAGAGATTTGCTTATAAGTGGTGCTTAAGAGATCATATGCAAATGCACTCGATGGATAAGCCATACGATTGCGACACTTTGCAACAAGGATTTATGAAAAAGCCCGAAAGTAATGATGAGCAGTCATTGAGTACGGGAGAAAGACCCTACGAATGTGACATATGTCATAATACCTtcagagaaaaaggaaatttgaATCGACATATGCTGATTCACACTGGAGAGAGGCCCTACAAATGCGAGATATGCTACGCCGCTTTCAGGGAAAAggctaaattaaatatacacatgCCTATACACACAGGTTTGAAGCAGTTCAAATGTACAATGTGTCATAGATCGTTTGCCCAAAAAACTGCTCTCAATAATCATATGTTGGCTCATAGCGGAGAAAAGCCGCACGCTTGTAATATTTGCGAAAAGACGTACAAAAGGAAATCAGAATTAATTAGGCATACGATGGTTCATACCGGTGAACGACCCTACGAATGTAAAGAGTGCCTAATGACGTTTCGGGAAAAAGCTAAGCTAAATTCTCACATGTTGGTTCATACGGGCGAAAAACCACACGAATGTCATATATGTCACAAAGCGTGTGCACGCAAATCCGATTTGAATAGTCACATGTTATTGCATACCGGCGGCCAATATGATTGCAAGGTTTGCGATAAAATTTTTACGCGAAAGTCTGATCTGAACAGACACACTTTAATACATACCGGTGAGAAGCCGTTTGCGTGCGATCTCTGTGAGATGGCGTTTAGAGAAAAAACGAGATTAAATTCTCATATGTTGATACATACCGGCGATAAGAGGCACGCATGCCATATTTGTCAGAAAACTTTTAAAGAGAAGGCATCTTTGAGGAAACACATGTTAAGTCACACGGGAGACAGGCCCTACGAGTGTTACGTCTGTCACAAAGCATTTACGCAAAAAACTACTTTGACCAGTCACATTTTGGTACATGCTGGGGAAAGGCCTTATGATTGTAGTACTTGTcaaaaagtttttaaagatAAAGCTGCGTTAAAGAAGCATTTATCGATGcatatcaatgaaaaaaatcacgaATGTTTGATTTGCTTGAAAAAATTTAGTCGTAAAGCCGCATTGAACATTCACCTCTCGACCCATCATACATCTTAA
Protein Sequence: MEGFKVKDEPMDALAIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKVFLPIENSEVDFSNEMVKLELEGETSGHPNWTAQITAANLCEKEDGISHRCLSAADFMQAQDAEKHPVFCANGQQPKFYKIQCSICKKWFLNNDSMVTHLRMHCNGNQCEVCQQNFQDSSSLHAHMLTHVGMSPLECNVCQKRFAYKWCLRDHMQMHSMDKPYDCDTLQQGFMKKPESNDEQSLSTGERPYECDICHNTFREKGNLNRHMLIHTGERPYKCEICYAAFREKAKLNIHMPIHTGLKQFKCTMCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACDLCEMAFREKTRLNSHMLIHTGDKRHACHICQKTFKEKASLRKHMLSHTGDRPYECYVCHKAFTQKTTLTSHILVHAGERPYDCSTCQKVFKDKAALKKHLSMHINEKNHECLICLKKFSRKAALNIHLSTHHTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00393738;
80% Identity: iTF_01232526;