Hros009188.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- -
- Assembly
- GCA_963989215.1
- Location
- OZ022313.1:2106188-2108127[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.033 2.8 8.7 0.5 2 23 134 155 133 155 0.97 2 15 6.4e-05 0.0053 17.2 1.3 2 23 160 181 159 181 0.98 3 15 2.6e-05 0.0022 18.4 2.3 2 23 188 209 187 209 0.97 4 15 7.8e-07 6.6e-05 23.2 0.9 1 23 243 265 243 265 0.98 5 15 0.0014 0.12 13.0 0.2 1 20 271 290 271 293 0.95 6 15 1.4e-06 0.00011 22.5 2.3 1 23 299 321 299 321 0.97 7 15 8.2e-07 6.9e-05 23.2 1.8 1 23 327 349 327 349 0.96 8 15 3.1e-05 0.0026 18.2 0.6 1 23 355 377 355 377 0.98 9 15 5.1e-05 0.0043 17.5 6.8 1 23 383 405 383 405 0.97 10 15 8e-08 6.7e-06 26.3 1.0 1 23 410 432 410 432 0.97 11 15 3.1e-05 0.0026 18.2 0.7 1 23 438 460 438 460 0.97 12 15 8.2e-07 6.9e-05 23.2 5.8 1 23 466 488 466 488 0.96 13 15 7.1e-06 0.00059 20.2 1.9 1 23 494 516 494 516 0.98 14 15 7.7e-05 0.0064 16.9 1.2 1 23 524 546 524 546 0.97 15 15 0.014 1.1 9.9 5.9 1 23 552 575 552 575 0.96
Sequence Information
- Coding Sequence
- ATGGACGGTTTTAAGGTGAAAGATGAACCGATGGATGCTTTAGCCATAGACACTCAGGTTATGGATGAAAACATTGTAAGCGTTGTGCTTAAAGAAGAACCTGGTGATAGATTTGATCCCGACTACATGGAGGATATCTGTTCTGGGACTTTCGACAAGGTATTCCTACCTATCGAAAACAATGAAGTGGACTTCCCCAATGAAATGGTGAAACTAGAGCTGGAAGGGGAATCAAGTGGACATCAAAATTGGGCTGCTCAAATAGCTAATGCTAACATATGTGATAAAGAGGAAGGTGCAATACAAAGATGTTTGAATGGTACAGATTTTATGCAGGCACAAGAAACAGAGAAACATGGTTTCTGTGCCAATGGCCAACAGACTaagttttacaaaattcagTGCTCTATATGTAAGAAATGgtttttaaataatgattCAATGGTGACTCACTTGAGAATGCACTGTAGTGGGAATCAATGTGAGGTATGCCAACAGAGCTTCCAAGATAATATGAGCTTGCACGCGCATATGCTCACGCACGTGGGAATGAGTCCACTGGAATGTAGCATTTGTCAGAAGAGATTCGCATACAGATGGTGTTTACGCAGTCACATGCAAATGCATGCGCTCGAAAAACCATACGACGCAGATGTCTTACAACAAGTTTTTATGAGAAAGGCGGGAGTGATGGGGGATCAGATGATGCCGGCCGAAGATCGTCCCTTTGAATGCGATGTTTGTCACGCGACATTCAGAGAAAAGGGGAACCTAAATAGACACATGTTAATTCACACTGGAGAAAGGCCCTATAAATGTGAGATATGTTTTGCGGCATTCAGAGAGAAAGCAAAGTTGAATATGCATATGCCCCTTCACACAGGTATCAAGCAGTTTAAATGCACTATGTGTCATAGATCGTTCGCACAGAAAACTGCGCTGAACAACCACATGCTAGCACATAGTGGAGAGAAACCGCACGCCTGCAACATTTGTGAGAAAACGTACAAAAGAAAGTCGGAATTAATACGGCATACTATGGTTCATACGGGAGAAAGACCATACGAGTGCAAGGAGTGTCTAATGACCTTCAGAGAAAAGGCCAAACTTAATTCTCACATGTTGGTCCACACCGGGGAGAAGCCGCATGAATGTCACGTTTGTCACAAAGCTTGTGCGAGGAAATCCGATCTAAACAGTCACATGCTATTACACACCGGAGGTCAATATGACTGCAAGGTTTGCGACAAGATCTTCACGCGGAAATCGGATCTAAATCGGCATACCTTGATCCACACAGGAGAAAAACCTTTTGCATGTGATCACTGTGATATGGCTTTTCGGGAAAAAACACGACTTAATGCTCATATGCTCATACATACGGGAGACAAGAGACATGCGTGTCACATTTGTCAAAAAACATTTAAAGAAAAGTCATCCCTTAGGAAACATATGTTGACTCATACCGGTGATAGACCTTACGAATGTTACGTATGCCATAAGGCATTCACGCAGAAAACTACTTTGAACAGCCATGTGCTGATACACGTaggagagagggaaagaccGTACGAGTGTGGCACTtgtcaaaaaatatgtaaGGATAAGGCGGCACTGAAGAAACACTTATCCGCGCACATCAACGAGAAAACCCACGAATGCCTGACCTgcttgaagaaattttctcacAGAGCCGCGTTGCACAGTCACCTCTCGACTAACCATTTGTCCTAA
- Protein Sequence
- MDGFKVKDEPMDALAIDTQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFDKVFLPIENNEVDFPNEMVKLELEGESSGHQNWAAQIANANICDKEEGAIQRCLNGTDFMQAQETEKHGFCANGQQTKFYKIQCSICKKWFLNNDSMVTHLRMHCSGNQCEVCQQSFQDNMSLHAHMLTHVGMSPLECSICQKRFAYRWCLRSHMQMHALEKPYDADVLQQVFMRKAGVMGDQMMPAEDRPFECDVCHATFREKGNLNRHMLIHTGERPYKCEICFAAFREKAKLNMHMPLHTGIKQFKCTMCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHVCHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACDHCDMAFREKTRLNAHMLIHTGDKRHACHICQKTFKEKSSLRKHMLTHTGDRPYECYVCHKAFTQKTTLNSHVLIHVGERERPYECGTCQKICKDKAALKKHLSAHINEKTHECLTCLKKFSHRAALHSHLSTNHLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01539746;
- 90% Identity
- -
- 80% Identity
- -