Basic Information

Insect: Formica exsecta
Gene Symbol: -
Assembly: GCA_003651465.1
Location: NW:424290-427979[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.024 1.6 8.7 0.5 2 23 140 161 139 161 0.97

2 15 6.9e-07 4.7e-05 23.0 1.4 2 23 166 187 165 187 0.98

3 15 3e-06 0.0002 21.0 1.2 2 23 194 215 193 215 0.96

4 15 6.3e-06 0.00043 19.9 2.6 1 23 246 268 246 268 0.98

5 15 0.0023 0.16 11.9 0.8 1 20 274 293 274 296 0.95

6 15 3.5e-06 0.00024 20.7 2.1 1 23 302 324 302 324 0.97

7 15 6.1e-07 4.1e-05 23.2 1.8 1 23 330 352 330 352 0.96

8 15 2.3e-05 0.0016 18.2 0.6 1 23 358 380 358 380 0.98

9 15 2.1e-05 0.0014 18.3 6.8 1 23 386 408 386 408 0.97

10 15 5.9e-08 4e-06 26.3 1.0 1 23 413 435 413 435 0.97

11 15 5.1e-05 0.0034 17.1 0.4 1 23 441 463 441 463 0.97

12 15 1.2e-06 8.2e-05 22.2 5.6 1 23 469 491 469 491 0.96

13 15 1.1e-06 7.1e-05 22.4 2.1 1 23 497 519 497 519 0.98

14 15 1.1e-06 7.3e-05 22.4 1.0 1 23 525 547 525 547 0.98

15 15 0.0013 0.09 12.6 2.4 1 23 553 576 553 576 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.024	1.6	8.7	0.5	2	23	140	161	139	161	0.97
2	15	6.9e-07	4.7e-05	23.0	1.4	2	23	166	187	165	187	0.98
3	15	3e-06	0.0002	21.0	1.2	2	23	194	215	193	215	0.96
4	15	6.3e-06	0.00043	19.9	2.6	1	23	246	268	246	268	0.98
5	15	0.0023	0.16	11.9	0.8	1	20	274	293	274	296	0.95
6	15	3.5e-06	0.00024	20.7	2.1	1	23	302	324	302	324	0.97
7	15	6.1e-07	4.1e-05	23.2	1.8	1	23	330	352	330	352	0.96
8	15	2.3e-05	0.0016	18.2	0.6	1	23	358	380	358	380	0.98
9	15	2.1e-05	0.0014	18.3	6.8	1	23	386	408	386	408	0.97
10	15	5.9e-08	4e-06	26.3	1.0	1	23	413	435	413	435	0.97
11	15	5.1e-05	0.0034	17.1	0.4	1	23	441	463	441	463	0.97
12	15	1.2e-06	8.2e-05	22.2	5.6	1	23	469	491	469	491	0.96
13	15	1.1e-06	7.1e-05	22.4	2.1	1	23	497	519	497	519	0.98
14	15	1.1e-06	7.3e-05	22.4	1.0	1	23	525	547	525	547	0.98
15	15	0.0013	0.09	12.6	2.4	1	23	553	576	553	576	0.97

Sequence Information

Coding Sequence: ATGGAAGGTTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCATGGTAAACCAAACCATTTGTATGAAACGGCAGCAGGTATCGTGCTTAAGGAGGAACCAGGTGACAGATTTGATCCCGACTACATGGAGGATATTTGCTCCGGCACTTTCGAGAAGGGCACTTTATTCTTGCCTATCGAAAACAATGAGGTGGATTTCTCCAATGAAatgGTAAAGTTAGAATTGGAAGGGGAATCTACCAGCCACCAGAACTGGGCAGCACAGATAGCAAGCGCAAATTTATGCGACAAGGAGGATGCTGTGATGCAACGATGTTTGgctaatacaaattttatacaagCACAGGATCCTGACAAGCATGGATTCTGTCAAAACGGTCAGCAAacgaaattttacaaaatacagtgctcaatttgcaaaaaatggtTTCTGAACAATGATTCCATGGTGACGCATCTGAGAATGCACTGTAGCGGAAATCAATGCGAGGTTTGCCAACAGAGTTTTACTGACAACTCTAGCCTGCACGCCCACATGTTAACTCACGTTGGAATGAGTCCGTTGGAGTGCCACATCTGCCAAAAGATATTCGCTTATAAGTGGAGCTTGAGAAATCACATGCAATTGCATGTATTGGATAAACCGTACGATTGCGACGCGTTGCAGCAGGCTTTTATGAAACGAGCGGGTTTAAACGATCAAATGATGGACGAGAGATTTTTCGAATGCGACGTATGTCATATGACGTTCAAGGagaaacttaatttaaatcgACACATGTCCAGTCACACGGCGGACAGGCCCTACAAATGCTCAGTCTGCTTCGAGGCGTTTAAGGAAAAGACGAAATTGAACATGCATTTGCCGCTCCACGCTGCGAACAAGCATTTCAAATGCACGCTCTGTCACAGATCCTTCGCTCAGAAAACGGCGCTCAGCAATCACATGCTGGCGCACAGTGGCGAGAAACCACACGCGTGTAACATCTGCGAGAAAACGTACAAGAGGAAATCGGAATTAATTAGGCACACCATGGTACATACCGGCGAGAGACCATACGAGTGCAAGGAATGCCTAATGACCTTCCGCGAGAAAGCCAAATTAAATTCGCACATGCTCGTTCATACGGGCGAGAAGCCACACGAGTGTCACATCTGTCATAAGGCGTGCGCGCGGAAATCGGATTTGAACAGTCACATGCTGTTGCACACCGGCGGTCAGTATGACTGCAAAGTTTGCGACAAGATCTTTACGAGGAAGTCGGATCTGAATAGACATACCCTGATACATACCGGCGAGAAGCCGTTTGCGTGCAATATGTGCGACATGGCGTTCCGGGAGAAGACGAGATTGAATTCGCACATGCTTATACACACGGGCGATAAGCGGCACGCGTGCCATATTTGCCAGAAAACGTTTAAGGAGAAGTCATCGTTGAGGAAACACATGTTAAGTCACACCGGCGACAGACCATACGAGTGCTACGTGTGTCACAAGGCCTTCACGCAGAAAACTACGTTGAACAGCCACATTATGGTTCACGCCGGTGAAAGACCCTTCGAATGTAGTacttgtcaaaaaatattcaaggaCAAAGCAGCGTTGAAAAAGCACTTGTCGATGCACGTTAACGAGAAAACTCACGAATGTCttatttgtatgaaaaaattcGCTCATAAAGCAGCATTAAATAGTCACCTATCCACGAATCACATATCCTAA
Protein Sequence: MEGFKVKDEPMDALAIDSHGKPNHLYETAAGIVLKEEPGDRFDPDYMEDICSGTFEKGTLFLPIENNEVDFSNEMVKLELEGESTSHQNWAAQIASANLCDKEDAVMQRCLANTNFIQAQDPDKHGFCQNGQQTKFYKIQCSICKKWFLNNDSMVTHLRMHCSGNQCEVCQQSFTDNSSLHAHMLTHVGMSPLECHICQKIFAYKWSLRNHMQLHVLDKPYDCDALQQAFMKRAGLNDQMMDERFFECDVCHMTFKEKLNLNRHMSSHTADRPYKCSVCFEAFKEKTKLNMHLPLHAANKHFKCTLCHRSFAQKTALSNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACNMCDMAFREKTRLNSHMLIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHIMVHAGERPFECSTCQKIFKDKAALKKHLSMHVNEKTHECLICMKKFAHKAALNSHLSTNHIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00280101; iTF_00264459; iTF_00265173; iTF_01245369; iTF_00109979; iTF_00729504; iTF_01077654; iTF_01254975;
80% Identity: -