Basic Information

Insect: Vespula germanica
Gene Symbol: -
Assembly: GCA_905340365.1
Location: HG996534.1:9263865-9265774[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4 1.1e+04 -3.7 0.0 27 44 162 179 160 182 0.83

2 12 0.37 1.1e+03 -0.5 0.1 24 52 187 215 184 216 0.86

3 12 1.1e-06 0.0031 17.3 0.0 8 44 228 263 225 268 0.85

4 12 0.00013 0.38 10.6 0.1 21 45 268 292 266 299 0.88

5 12 0.019 56 3.7 0.1 21 44 324 347 320 355 0.85

6 12 0.49 1.4e+03 -0.8 0.0 21 45 352 376 347 383 0.84

7 12 0.048 1.4e+02 2.4 0.2 21 44 380 403 377 407 0.76

8 12 1.3 3.7e+03 -2.2 0.0 27 44 413 430 412 438 0.79

9 12 0.12 3.3e+02 1.2 0.0 21 44 435 458 431 462 0.87

10 12 0.07 2e+02 1.9 0.1 25 44 467 486 461 492 0.88

11 12 0.35 1e+03 -0.3 0.1 22 44 492 514 488 518 0.86

12 12 0.018 51 3.8 0.0 21 46 519 544 516 551 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4	1.1e+04	-3.7	0.0	27	44	162	179	160	182	0.83
2	12	0.37	1.1e+03	-0.5	0.1	24	52	187	215	184	216	0.86
3	12	1.1e-06	0.0031	17.3	0.0	8	44	228	263	225	268	0.85
4	12	0.00013	0.38	10.6	0.1	21	45	268	292	266	299	0.88
5	12	0.019	56	3.7	0.1	21	44	324	347	320	355	0.85
6	12	0.49	1.4e+03	-0.8	0.0	21	45	352	376	347	383	0.84
7	12	0.048	1.4e+02	2.4	0.2	21	44	380	403	377	407	0.76
8	12	1.3	3.7e+03	-2.2	0.0	27	44	413	430	412	438	0.79
9	12	0.12	3.3e+02	1.2	0.0	21	44	435	458	431	462	0.87
10	12	0.07	2e+02	1.9	0.1	25	44	467	486	461	492	0.88
11	12	0.35	1e+03	-0.3	0.1	22	44	492	514	488	518	0.86
12	12	0.018	51	3.8	0.0	21	46	519	544	516	551	0.90

Sequence Information

Coding Sequence: ATGGAAGGTTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCAGGTTATGGACGAAAATATTGTAAGCGTCGTACTTAAAGAAGAACCTGGAGATAGATTCGATCCGGACTACATGGAGGATATATGCTCTGGTACTTTCGAGAAGGTATTCTTACCTATCGAAAACAGTGAAGTGGATTTTTCCAATGAGATGGTAAAGTTAGAGCTGGAGGGAGAAACTAGCGGACATCCGAACTGGACGGCACAGATCACGGCGACTAACCTTTGCGAGAAAGAAGATGGCATGCCGCATAGGTGTTTAAGTGCGGCGGACTTTATGCAAGCTCAAGACGCCGAGAAGCATCCTGTATTTTGTGCTAACGGACAGCAGCCCAAATTTTACAAGATTCAATGTTCCATCTGCAAGAAATGGTTTCTTAACAACGATTCTATGGTCACGCATTTAAGAATGCATTGTAACGGGAATCAGTGCGAGGTTTGTCAGCAAAACTTTCAAGACAGTTCCAGCTTGCATGCGCATATGTTAACACACGTCGGTATGAGTCCACTGGAGTGCAATGTTTGTCAGAAGAGATTCGCTTATAAGTGGTGCTTAAGAAATCATATGCAAATGCATTCGATAGATAAACCATATGACTGTGATGCTTTGCAACAGGGATTTATGAAAAAGCCTGAAGGTAACGACGAGCAGTCGTTGAGTACGGGAGAAAGACCCTTCGAATGTGACGTATGCCACGCTACGTttcgagagaaaggaaatttgAATCGACACATGCTGATTCACACCGGTGAGAGGCCCTACAAATGCGAGATATGCTACGCGGCGTTCAGGGAGAAAgctaaattaaatattcacaTGCCCATTCACACGGGCATGAAGCAGTTTAAATGTACCATGTGTCACAGATCGTTCGCCCAAAAAACTGCTCTCAACAATCACATGCTGGCGCATAGCGGAGAAAAGCCGCACGCGTGTAACATTTGCGAGAAGACGTACAAAAGGAAATCGGAATTGATCAGGCATACGATGGTTCATACCGGCGAACGACCTTACGAATGTAAAGAGTGCCTAATGACGTTTAGGGAAAAGGCTAAGCTAAATTCTCACATGTTGGTTCACACCGGCGAGAAACCCCACGAATGTCATATATGCCACAAAGCGTGCGCGCGCAAGTCCGATTTGAACAGTCACATGTTGTTGCATACCGGCGGGCAATACGATTGCAAGGTTTGCGATAAAATTTTCACGCGTAAGTCCGATCTGAACAGACATACCTTGATACATACGGGTGAAAAGCCATTCGCGTGCGATCTCTGCGACATGGCGTTCAGAGAAAAGACGAGATTGAATTCTCATATGCTGATACATACCGGTGATAAGAGGCACGCATGCCATATTTGTCAGAAaacgtttaaagaaaaatcgtcgtTGAGAAAGCACATGTTGAGTCATACGGGCGACAGACCGTACGAATGTTACGTATGTCACAAGGCGTTTACGCAAAAGACTACTTTGAACAGTCACATTTTGGTACATGCCGGGGAAAGGCCTTACGAGTGCAGCACTTgtcagaaaatttttaaagacaAGGCTGCGTTGAAGAAGCATTTATCGATGCATATCAATGAAAAGAATCACGAATGTTTGATTTGCTTAAAGAAATTTAGTCATAAGGCCGCATTGAACAGTCACCTGTCGACCAATCATACATCTTAA
Protein Sequence: MEGFKVKDEPMDALAIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKVFLPIENSEVDFSNEMVKLELEGETSGHPNWTAQITATNLCEKEDGMPHRCLSAADFMQAQDAEKHPVFCANGQQPKFYKIQCSICKKWFLNNDSMVTHLRMHCNGNQCEVCQQNFQDSSSLHAHMLTHVGMSPLECNVCQKRFAYKWCLRNHMQMHSIDKPYDCDALQQGFMKKPEGNDEQSLSTGERPFECDVCHATFREKGNLNRHMLIHTGERPYKCEICYAAFREKAKLNIHMPIHTGMKQFKCTMCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACDLCDMAFREKTRLNSHMLIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPYECSTCQKIFKDKAALKKHLSMHINEKNHECLICLKKFSHKAALNSHLSTNHTS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00393738;
80% Identity: iTF_01513615;