Basic Information

Insect: Atta colombica
Gene Symbol: -
Assembly: GCA_001594045.1
Location: NW:5388906-5391991[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.076 4 7.3 0.8 2 23 127 148 126 148 0.97

2 15 2.9e-06 0.00015 21.2 1.5 2 23 153 174 152 174 0.98

3 15 2.6e-06 0.00014 21.3 0.7 2 23 181 202 180 202 0.96

4 15 6.5e-06 0.00035 20.1 2.4 1 23 235 257 235 257 0.97

5 15 0.00096 0.051 13.3 0.5 1 20 264 283 264 286 0.95

6 15 1.6e-06 8.2e-05 22.0 2.2 1 23 292 314 292 314 0.97

7 15 6.7e-07 3.6e-05 23.2 1.8 1 23 320 342 320 342 0.96

8 15 2.5e-05 0.0014 18.2 0.6 1 23 348 370 348 370 0.98

9 15 2.4e-05 0.0013 18.3 6.8 1 23 376 398 376 398 0.97

10 15 6.6e-08 3.5e-06 26.4 1.0 1 23 403 425 403 425 0.97

11 15 6.9e-05 0.0036 16.9 0.3 1 23 431 453 431 453 0.97

12 15 1.3e-06 7.1e-05 22.2 5.6 1 23 459 481 459 481 0.96

13 15 1.8e-06 9.7e-05 21.8 1.9 1 23 487 509 487 509 0.98

14 15 2e-05 0.001 18.6 1.7 1 23 515 537 515 537 0.98

15 15 0.0056 0.3 10.8 3.2 1 23 543 566 543 566 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.076	4	7.3	0.8	2	23	127	148	126	148	0.97
2	15	2.9e-06	0.00015	21.2	1.5	2	23	153	174	152	174	0.98
3	15	2.6e-06	0.00014	21.3	0.7	2	23	181	202	180	202	0.96
4	15	6.5e-06	0.00035	20.1	2.4	1	23	235	257	235	257	0.97
5	15	0.00096	0.051	13.3	0.5	1	20	264	283	264	286	0.95
6	15	1.6e-06	8.2e-05	22.0	2.2	1	23	292	314	292	314	0.97
7	15	6.7e-07	3.6e-05	23.2	1.8	1	23	320	342	320	342	0.96
8	15	2.5e-05	0.0014	18.2	0.6	1	23	348	370	348	370	0.98
9	15	2.4e-05	0.0013	18.3	6.8	1	23	376	398	376	398	0.97
10	15	6.6e-08	3.5e-06	26.4	1.0	1	23	403	425	403	425	0.97
11	15	6.9e-05	0.0036	16.9	0.3	1	23	431	453	431	453	0.97
12	15	1.3e-06	7.1e-05	22.2	5.6	1	23	459	481	459	481	0.96
13	15	1.8e-06	9.7e-05	21.8	1.9	1	23	487	509	487	509	0.98
14	15	2e-05	0.001	18.6	1.7	1	23	515	537	515	537	0.98
15	15	0.0056	0.3	10.8	3.2	1	23	543	566	543	566	0.95

Sequence Information

Coding Sequence: atgaaacagCAGCAGGATGAGAACATTGTGAGCGTCGTGCTTAAGGAGGAACCAGGCGACAGAACATTTGATCCAGACTACATGGAGGATATTTGCTCAGGTACTTTCGAGAAGGGCACTCTGTTTTTGCCTATCGAAAATAATGAGGTGGATTTCTCCAATGAAATGgagctttgtgaatttttacagGTGAAGTTAGAATTGGAAGGAGAATCGACCAGTCACCAGAACTGGTCGCAAATAGCAAATACTAATTTATGCGACAAAGAGGATGTGATGCAACGATGCTTGactaatacaaattttatacaaacacAAGACTCCGATAAGCATCATGGATTCTGTCAAAATGGGCAACAACcaaaattctacaaaattcAATGCTCAATGTGCAAGAAATGGTTTCTGAATAATGATTCCATGGTGACGCATCTAAAGACGCACTGTAGTGGAAATCAATGTGAGGTCtgtcaacaaaattttactgaCAACTCTAGCCTGCATGCCCACATGTTAACTCACGTTGGAATGAGTCCATTAGAGTGCAACATCTGTCAAAAAAGATTCGCTTATAAATGGAGCTTAAGAAGCCACATGCAATTACATGTATTAGATAAACCTTACGATTGTGATGCATTGCAGCAGGCTTTTATGAAACGAGCTGGTATGAATGAACAGATAATGCCAATGGAAGACAGGCCCTTTGAATGTGATGTGTGTCACATGACGTTTaaggagaaaattaatttgaatcgaCACATGACCAATCACACGAATGCAGACAAACCCTATAAATGCACGATTTGCTTCGAGGCGTTCAAAGAGAAGGCGAAATTGAACATGCATTTGCCACTCCATACGGGAAACAAACATTTCAAGTGTACATTGTGTCATAGATCGTTCGCCCAAAAAACCGCGCTCAACAATCATATGTTGGCGCATAGCGGTGAGAAACCACATGCGTGTAACATTTGTGAAAAAACGTACAAGAGAAAATCAGAATTAATTAGGCATACTATGGTTCACACTGGTGAGAGACCATATGAGTGTAAAGAGTGCTTAATGACTTTTCGAGAAAAGGCCAAATTGAATTCCCATATGTTGGTCCACACGGGCGAGAAACCGCACGAGTGTCACATCTGTCACAAGGCATGCGCAAGAAAATCGGATTTGAACAGTCATATGTTATTACACACTGGTGGGCAATATGATTGCAAAGTTTGCGACAAAATCTTCACCAGGAAATCGGATCTGAATCGACATACTCTAATACACACCGGTGAGAAACCGTTTGCGTGCAATATGTGCGACATGGCGTTCAGGGAGAAGACGCGATTAAACTCGCACATGATCATACATACAGGCGATAAGAGACACGCGTGTCACATCTGCCAGAAAACATTCAAGGAAAAGTCATCGTTGAGGAAACATATGTTAAGTCACACTGGTGACAGACCGTACGAATGTTATGTGTGTCACAAAGCTTTCACGCAGAAGACCACGTTAAACAGCCACATCCTGATTCACGCCGGTGAGAGACCATTTGAATGTAGTACTTGtcaaaaaatatgcaaagatAAAGCAGCATTGAAAAAGCACTTATTGGTGCACGTTAACGAAAAAACTCACGAATGTCttatttgtatgaaaaaattcgCCCATAAAACAGCATTAAATAGTCACCTATCCTCAAATCACATATCCTAA
Protein Sequence: MKQQQDENIVSVVLKEEPGDRTFDPDYMEDICSGTFEKGTLFLPIENNEVDFSNEMELCEFLQVKLELEGESTSHQNWSQIANTNLCDKEDVMQRCLTNTNFIQTQDSDKHHGFCQNGQQPKFYKIQCSMCKKWFLNNDSMVTHLKTHCSGNQCEVCQQNFTDNSSLHAHMLTHVGMSPLECNICQKRFAYKWSLRSHMQLHVLDKPYDCDALQQAFMKRAGMNEQIMPMEDRPFECDVCHMTFKEKINLNRHMTNHTNADKPYKCTICFEAFKEKAKLNMHLPLHTGNKHFKCTLCHRSFAQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACNMCDMAFREKTRLNSHMIIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILIHAGERPFECSTCQKICKDKAALKKHLLVHVNEKTHECLICMKKFAHKTALNSHLSSNHIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_01228514;
80% Identity: -