Basic Information

Insect: Camponotus floridanus
Gene Symbol: -
Assembly: GCA_003227725.1
Location: NW:1099103-1104529[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.022 1.8 8.7 0.5 2 23 136 157 135 157 0.97

2 15 5.7e-07 4.5e-05 23.1 1.3 2 23 162 183 161 183 0.98

3 15 3e-06 0.00024 20.8 2.0 2 23 190 211 189 211 0.96

4 15 5.7e-06 0.00045 20.0 2.6 1 23 242 264 242 264 0.98

5 15 0.0045 0.36 10.8 0.3 1 20 270 289 270 292 0.95

6 15 3.2e-06 0.00025 20.8 2.1 1 23 298 320 298 320 0.97

7 15 5.4e-07 4.3e-05 23.2 1.8 1 23 326 348 326 348 0.96

8 15 2.1e-05 0.0016 18.2 0.6 1 23 354 376 354 376 0.98

9 15 1.9e-05 0.0015 18.3 6.8 1 23 382 404 382 404 0.97

10 15 5.3e-08 4.3e-06 26.3 1.0 1 23 409 431 409 431 0.97

11 15 4.6e-05 0.0036 17.1 0.4 1 23 437 459 437 459 0.97

12 15 1.1e-06 8.7e-05 22.2 5.6 1 23 465 487 465 487 0.96

13 15 9.4e-07 7.5e-05 22.4 2.1 1 23 493 515 493 515 0.98

14 15 9.7e-07 7.7e-05 22.4 1.0 1 23 521 543 521 543 0.98

15 15 0.0012 0.095 12.6 2.4 1 23 549 572 549 572 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.022	1.8	8.7	0.5	2	23	136	157	135	157	0.97
2	15	5.7e-07	4.5e-05	23.1	1.3	2	23	162	183	161	183	0.98
3	15	3e-06	0.00024	20.8	2.0	2	23	190	211	189	211	0.96
4	15	5.7e-06	0.00045	20.0	2.6	1	23	242	264	242	264	0.98
5	15	0.0045	0.36	10.8	0.3	1	20	270	289	270	292	0.95
6	15	3.2e-06	0.00025	20.8	2.1	1	23	298	320	298	320	0.97
7	15	5.4e-07	4.3e-05	23.2	1.8	1	23	326	348	326	348	0.96
8	15	2.1e-05	0.0016	18.2	0.6	1	23	354	376	354	376	0.98
9	15	1.9e-05	0.0015	18.3	6.8	1	23	382	404	382	404	0.97
10	15	5.3e-08	4.3e-06	26.3	1.0	1	23	409	431	409	431	0.97
11	15	4.6e-05	0.0036	17.1	0.4	1	23	437	459	437	459	0.97
12	15	1.1e-06	8.7e-05	22.2	5.6	1	23	465	487	465	487	0.96
13	15	9.4e-07	7.5e-05	22.4	2.1	1	23	493	515	493	515	0.98
14	15	9.7e-07	7.7e-05	22.4	1.0	1	23	521	543	521	543	0.98
15	15	0.0012	0.095	12.6	2.4	1	23	549	572	549	572	0.97

Sequence Information

Coding Sequence: ATGGAAGGTTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCAGGTTATGGATGAGAACATTGTGAGCGTCGTGCTTAAGGAGGAACCAGGTGACAGATTTGATCCCGACTACATGGAGGATATTTGCTCTGGCACTTTCGAGAAGGGCACTTTATTCTTGCCTATCGAAAACAATGAGGTGGACTTCTCCAACGAAATGGTAAAGTTAGAGTTGGAAGGAGAATCTACCAGCCATCAGAATTGGGCAGCACAGATAGCAAGTGCAAATTTATGCGACAAGGAGGATGGTGTGATGCAACGATGTTTGgctaatacaaattttatacaagCGCAGGATCCTGACAAGCATGGGTTCTGTCAAAACGGTCAACaagcaaaattttataaaatacaatgctCAATTTGCAAGAAATGGTTTCTGAACAATGATTCCATGGTGACGCATCTGAGGATGCACTGTAGCGGAAATCAATGTGAGGTCTGTCAACAGAGTTTTTCTGACAACTCTAGCTTGCACGCTCACATGTTAACCCATGTTGGAATGAGTCCATTAGAGTGCCACATCTGCCAAAAAAGATTCGCATATAAGTGGAGCTTGAGAAGTCACATGCAATTACATGTATTGGACAAGCCATACGATTGCGACGCGTTGCAGCAGGCTTTCATGAAGCGAGCGGGCTTGAACGATCAAATAATAGATGAAAGATTCTTCGAATGCGATGTATGTCACATGACATTCAAGGAGAAGCTTAACTTAAATCGACATATGTCCAGTCACACGGGGGATAGACCCTACAAATGCGCGGTCTGCTTCGAGGCGTTTAAGGAGAAGGCGAAATTAAACATGCATTTGCCGCTTCACGCGGTGAACAAACAATTCAAATGTACGCTCTGTCACAGATCCTTCGCTCAGAAAACGGCGCTCAGCAATCATATGCTGGCTCACAGTGGCGAGAAGCCGCATGCGTGTAACATCTGCGAAAAAacgtataaaagaaaatcagaATTAATTAGGCACACCATGGTACATACCGGCGAGAGACCGTACGAGTGTAAAGAGTGCTTAATGACCTTCCGCGAGAAAGCCAAATTAAATTCGCACATGCTCGTTCATACGGGCGAGAAGCCGCACGAGTGTCACATCTGCCACAAGGCGTGCGCGCGAAAGTCGGATTTGAACAGTCATATGCTGTTGCACACTGGCGGTCAGTACGATTGCAAGGTTTGCGACAAGATCTTCACGAGGAAGTCGGATCTGAACAGACACACCCTGATACACACCGgcgaaaagccgttcgcgTGCAATATGTGCGACATGGCGTTCCGGGAGAAGACGAGATTGAATTCGCACATGCTCATACACACGGGCGATAAGCGACACGCGTGCCACATTTGCCAGAAAACGTTCAAGGAGAAGTCGTCGTTGAGGAAACACATGTTAAGTCACACCGGTGACAGACCGTACGAGTGCTACGTGTGTCACAAGGCCTTCACGCAGAAAACAACGTTGAACAGCCATATTATGGTCCATGCCGGGGAGAGACCCTTCGAATGTAGTACttgtcaaaaaatattcaaggaCAAAGCAGCATTGAAAAAGCATTTGTCGATGCACGTTAACGAGAAAACTCACGAATGTcttatttgtatgaaaaagTTCGCTCATAAAGCAGCATTAAATAGTCACCTGTCCACGAATCACATATCCTAA
Protein Sequence: MEGFKVKDEPMDALAIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKGTLFLPIENNEVDFSNEMVKLELEGESTSHQNWAAQIASANLCDKEDGVMQRCLANTNFIQAQDPDKHGFCQNGQQAKFYKIQCSICKKWFLNNDSMVTHLRMHCSGNQCEVCQQSFSDNSSLHAHMLTHVGMSPLECHICQKRFAYKWSLRSHMQLHVLDKPYDCDALQQAFMKRAGLNDQIIDERFFECDVCHMTFKEKLNLNRHMSSHTGDRPYKCAVCFEAFKEKAKLNMHLPLHAVNKQFKCTLCHRSFAQKTALSNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACNMCDMAFREKTRLNSHMLIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHIMVHAGERPFECSTCQKIFKDKAALKKHLSMHVNEKTHECLICMKKFAHKAALNSHLSTNHIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00730223;
80% Identity: iTF_00264459;