Basic Information

Insect: Vollenhovia emeryi
Gene Symbol: -
Assembly: GCA_000949405.1
Location: NW:1001661-1004603[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.014 1.1 9.5 0.6 2 23 136 157 135 157 0.97

2 15 7.3e-07 5.6e-05 23.0 1.4 2 23 162 183 161 183 0.98

3 15 2.4e-06 0.00019 21.3 0.7 2 23 190 211 189 211 0.96

4 15 3.5e-06 0.00027 20.8 2.0 1 23 245 267 245 267 0.97

5 15 0.00091 0.07 13.2 0.5 1 20 274 293 274 296 0.95

6 15 2.4e-06 0.00019 21.3 1.3 1 23 302 324 302 324 0.97

7 15 6.4e-07 4.9e-05 23.2 1.8 1 23 330 352 330 352 0.96

8 15 2.4e-05 0.0019 18.2 0.6 1 23 358 380 358 380 0.98

9 15 2.3e-05 0.0017 18.3 6.8 1 23 386 408 386 408 0.97

10 15 6.2e-08 4.8e-06 26.3 1.0 1 23 413 435 413 435 0.97

11 15 0.00052 0.04 14.0 0.5 1 23 441 463 441 463 0.96

12 15 1.1e-06 8.5e-05 22.4 5.0 1 23 469 491 469 491 0.96

13 15 1.6e-06 0.00012 21.9 1.9 1 23 497 519 497 519 0.98

14 15 8.8e-07 6.8e-05 22.7 0.6 1 23 525 547 525 547 0.98

15 15 0.0053 0.41 10.8 3.2 1 23 553 576 553 576 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.014	1.1	9.5	0.6	2	23	136	157	135	157	0.97
2	15	7.3e-07	5.6e-05	23.0	1.4	2	23	162	183	161	183	0.98
3	15	2.4e-06	0.00019	21.3	0.7	2	23	190	211	189	211	0.96
4	15	3.5e-06	0.00027	20.8	2.0	1	23	245	267	245	267	0.97
5	15	0.00091	0.07	13.2	0.5	1	20	274	293	274	296	0.95
6	15	2.4e-06	0.00019	21.3	1.3	1	23	302	324	302	324	0.97
7	15	6.4e-07	4.9e-05	23.2	1.8	1	23	330	352	330	352	0.96
8	15	2.4e-05	0.0019	18.2	0.6	1	23	358	380	358	380	0.98
9	15	2.3e-05	0.0017	18.3	6.8	1	23	386	408	386	408	0.97
10	15	6.2e-08	4.8e-06	26.3	1.0	1	23	413	435	413	435	0.97
11	15	0.00052	0.04	14.0	0.5	1	23	441	463	441	463	0.96
12	15	1.1e-06	8.5e-05	22.4	5.0	1	23	469	491	469	491	0.96
13	15	1.6e-06	0.00012	21.9	1.9	1	23	497	519	497	519	0.98
14	15	8.8e-07	6.8e-05	22.7	0.6	1	23	525	547	525	547	0.98
15	15	0.0053	0.41	10.8	3.2	1	23	553	576	553	576	0.95

Sequence Information

Coding Sequence: ATGGAAGGTTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCAGGTTATGGATGAGAACATTGTGAGCGTCGTGCTTAAGGAGGAACCAGGCGACAGATTTGATCCCGACTACATGGAGGATATTTGCTCAGGCACTTTCGAGAAGGGCACTCTGTTCTTGCCTATCGAAAACAATGAGGTGGACTTCGCTGGTGAAATGGTGAAGTTGGAGCTGGAGGGAGAGTCGACGAGTCACCAGAACTGGTCGCAAATAGCGAATACTAATTTATGCGACAAGGAGGATGGTGTTATGCAGCGATGCTTGAATAACGCCAACTTTATACAAGCGCAAGAGTCTGAGAAGCATCATGGATTCTGTCAAAACGGGCAGCAGCCCAAGTTCTACAAGATCCAGTGCTCAATCTGCAAGAAATGGTTTCTGAACAATGATTCCATGGTGACGCACCTAAGGACGCACTGCAGTGGAAATCAGTGCGAGGTTTGCCAGCAGAGCTTTACCGACAACTCCAGCCTGCACGCCCACATGTTGACTCACGTTGGAATGAGCCCGTTGGAGTGCAACATCTGTCAGAAAAGATTCGCTTACAAGTGGAGCCTGAGAAGCCACATGCAATTGCACGTGCTGGATAAACCGTACGATTGCGACGCGTTGCAGCAGGCCTTCATGAAGCGAGCCGGTATGAACGAGCAGATAATGCAGATGGAGGACAGGCCGCCGTTCGAGTGCGACGTGTGTCACATGACGTTTAAGGAGAAGATGAATTTGAATCGACACATGGCCAATCATACGAATCCGGACAAGCCCTATAAATGTACCATCTGCTTCGAGGCGTTCAAGGAGAAGGCGAAGCTGAACATGCACCTGCCGCTCCACGCGGGGAACAAGCATTTCAAGTGTTCGCTGTGTCACAGAGCGTTCGCCCAGAAAACTGCGCTCAACAATCACATGCTGGCGCACAGCGGCGACAAGCCGCACGCGTGTAACATTTGCGAGAAAACGTACAAGAGAAAGTCAGAGCTGATCAGGCATACGATGGTCCACACCGGCGAGAGGCCGTACGAGTGTAAAGAGTGCTTGATGACTTTCCGGGAGAAGGCCAAGCTCAATTCTCACATGCTGGTCCACACGGGCGAGAAGCCGCACGAGTGTCACATCTGTCACAAGGCATGCGCAAGGAAATCGGATTTAAACAGTCACATGTTGTTGCACACCGGCGGCCAGTACGATTGCAAGGTGTGCGACAAGATCTTCACCAGAAAATCAGATCTGAATCGGCACACTCTGATACACACCGGTGAGAAACCGTTCGCGTGCAGTATGTGCGATATGGCGTTCAGGGAGAAGACGCGACTCAACTCGCACTTGACCATACACACGGGCGATAAGCGACACGCGTGTCACATCTGCGAGAAGACGTTTAAGGAGAAGTCGTCGTTGAGGAAACACATGTTAAGTCACACCGGTGACAGACCATACGAATGTTACGTGTGTCACAAAGCTTTCACGCAGAAGACCACGTTGAACAGCCACATCCTGGTACACGCTGGTGAGAGACCATTTGAATGTAGTACTTgtcagaaaatatttaaagacaaAGCGGCGTTGAAAAAGCACTTGTTGGTGCACGTTAACGAAAAAACTCACGAATGTCTTATTTGTATGAAAAAATTCGCCCATAAAACAGCATTGAATAGTCACCTGTCCTCAAATCACATATCCTAA
Protein Sequence: MEGFKVKDEPMDALAIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKGTLFLPIENNEVDFAGEMVKLELEGESTSHQNWSQIANTNLCDKEDGVMQRCLNNANFIQAQESEKHHGFCQNGQQPKFYKIQCSICKKWFLNNDSMVTHLRTHCSGNQCEVCQQSFTDNSSLHAHMLTHVGMSPLECNICQKRFAYKWSLRSHMQLHVLDKPYDCDALQQAFMKRAGMNEQIMQMEDRPPFECDVCHMTFKEKMNLNRHMANHTNPDKPYKCTICFEAFKEKAKLNMHLPLHAGNKHFKCSLCHRAFAQKTALNNHMLAHSGDKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACSMCDMAFREKTRLNSHLTIHTGDKRHACHICEKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPFECSTCQKIFKDKAALKKHLLVHVNEKTHECLICMKKFAHKTALNSHLSSNHIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_01228514;
80% Identity: -