Basic Information

Insect: Lepidotrigona ventralis
Gene Symbol: -
Assembly: GCA_002806875.1
Location: NIPQ01065625.1:11084-14203[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.023 3.1 9.0 0.5 2 23 35 56 34 56 0.97

2 15 2e-05 0.0027 18.6 1.4 2 23 61 82 60 82 0.98

3 15 1.4e-05 0.0019 19.1 2.5 2 23 89 110 88 110 0.97

4 15 1.4e-06 0.00019 22.3 2.5 1 23 144 166 144 166 0.98

5 15 0.00023 0.031 15.3 0.4 1 23 172 194 172 194 0.98

6 15 7e-07 9.3e-05 23.2 3.3 1 23 200 222 200 222 0.97

7 15 5.8e-07 7.7e-05 23.5 1.8 1 23 228 250 228 250 0.96

8 15 2.2e-05 0.0029 18.5 0.6 1 23 256 278 256 278 0.98

9 15 2.1e-05 0.0027 18.6 6.8 1 23 284 306 284 306 0.97

10 15 5.7e-08 7.5e-06 26.6 1.0 1 23 311 333 311 333 0.97

11 15 0.00015 0.02 15.8 0.3 1 23 339 361 339 361 0.97

12 15 2.8e-06 0.00037 21.3 7.8 1 23 367 389 367 389 0.96

13 15 1.5e-06 0.00019 22.2 1.9 1 23 395 417 395 417 0.98

14 15 5.9e-06 0.00077 20.3 0.7 1 23 423 445 423 445 0.98

15 15 0.00016 0.021 15.8 3.2 1 23 451 474 451 474 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.023	3.1	9.0	0.5	2	23	35	56	34	56	0.97
2	15	2e-05	0.0027	18.6	1.4	2	23	61	82	60	82	0.98
3	15	1.4e-05	0.0019	19.1	2.5	2	23	89	110	88	110	0.97
4	15	1.4e-06	0.00019	22.3	2.5	1	23	144	166	144	166	0.98
5	15	0.00023	0.031	15.3	0.4	1	23	172	194	172	194	0.98
6	15	7e-07	9.3e-05	23.2	3.3	1	23	200	222	200	222	0.97
7	15	5.8e-07	7.7e-05	23.5	1.8	1	23	228	250	228	250	0.96
8	15	2.2e-05	0.0029	18.5	0.6	1	23	256	278	256	278	0.98
9	15	2.1e-05	0.0027	18.6	6.8	1	23	284	306	284	306	0.97
10	15	5.7e-08	7.5e-06	26.6	1.0	1	23	311	333	311	333	0.97
11	15	0.00015	0.02	15.8	0.3	1	23	339	361	339	361	0.97
12	15	2.8e-06	0.00037	21.3	7.8	1	23	367	389	367	389	0.96
13	15	1.5e-06	0.00019	22.2	1.9	1	23	395	417	395	417	0.98
14	15	5.9e-06	0.00077	20.3	0.7	1	23	423	445	423	445	0.98
15	15	0.00016	0.021	15.8	3.2	1	23	451	474	451	474	0.97

Sequence Information

Coding Sequence: ATGCAAAGGTGCTTAACAAATGCAAACTTTGCTCAAGTGCATGATGCAGAGAAACATTCTGGATTTTGTCCAAACGGACAGCAgccgaaattttataaaatacagtgTTCCATTTGCAAGAAAtggtttttaaataatgattcCATGGTCACTCATCTAAGAATGCACTGTAGTGGAAATCAGTGCGAGGTTTGCCAACAAAATTTTCAGGATAGTTCCAGTTTACACGCTCATATGTTGACTCATGTTGGAATGAGTCCATTGGAATGCAATGTCTGTCAGAAACGATTCGCTTACAAATGGTGTCTACGTAGTCACATGCAAATGCACGTGCTAGAAAAACCGTACGACAACGACACGTTGCAACAAGTGTTTATGAAAAGGCCAGATTCCGAGCATGATCAATCAATGAGCACAGATGAAAGAGTGTTTGAATGTGATGTTTGTCACACGACGTTCAAAGAGAAATCTAGTCTAAACCGTCATGTGCTTACTCATACAGAGGAAAGACCGTATAAATGCGATGTATGTTTTGCAGCATTTAGGGAGAAAGCAAAGTTGAACATGCACATGACGTTACATGGTGGAAGCAAACAGTTCAAGTGCACGATGTGTCACAGATCATTCACACAGAAAACAGCATTGAACAATCACATGTTGGCGCATAGCGGTGAGAAACCTCATGCATgtaatatttgtgaaaaaacGTACAAACGAAAATCAGAATTGATAAGGCATACGATGGTTCACACTGGAGAGAGGCCGTACGAGTGTAAAGAATGCCTAATGACTTTTAGAGAAAAGGCAAAATTAAACTCTCACATGCTTGTACACACGGGTGAAAAACCACACGAATGTCATATATGTCATAAAGCGTGTGCCCGAAAATCCGATCTTAATAGCCATATGCTATTACATACAGGGGGTCAATACGATTGCAAAGTTTGTGACAAAATATTTACCCGTAAATCGGATTTAAATCGACATACTCTGATACATACAGGTGAAAAGCCGTTTGCCTGTGAATTATGTAACATGGCCTTTAGAGAAAAAACTAGATTAAATTCTCACATGCTTATACATACTGGTGATAAACGTCATGCCTGTCATATTTGTCACAAAACGTTCAAAGAGAAGTCTTCATTGCGGAAACACATGTTAAGTCACACCGGCGACAGACCATACGAGTGCTATGTATGTCATAAAGCATTTACTCAGAAAACAACGTTAAATAGTCACATATTGGTGCATGCAGGAGAACGACCATATGAATGTAGTGCATGTCAAAAGATATTTAAGGATAAAGCAACGCTGAAAAAACATTTGTCTGTGCACATAAACGAAAAAACTCATGAATGTCtgatttgtttaaaaaaattcacccACAAAGCTGCATTAAATAGTCATTTATCGACAAATCATACATCCTAA
Protein Sequence: MQRCLTNANFAQVHDAEKHSGFCPNGQQPKFYKIQCSICKKWFLNNDSMVTHLRMHCSGNQCEVCQQNFQDSSSLHAHMLTHVGMSPLECNVCQKRFAYKWCLRSHMQMHVLEKPYDNDTLQQVFMKRPDSEHDQSMSTDERVFECDVCHTTFKEKSSLNRHVLTHTEERPYKCDVCFAAFREKAKLNMHMTLHGGSKQFKCTMCHRSFTQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACELCNMAFREKTRLNSHMLIHTGDKRHACHICHKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPYECSACQKIFKDKATLKKHLSVHINEKTHECLICLKKFTHKAALNSHLSTNHTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00087361;
80% Identity: -