Basic Information

Insect: Halictus rubicundus
Gene Symbol: -
Assembly: GCA_028454235.1
Location: CM052173.1:2024051-2025944[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.031 2.5 8.7 0.5 2 23 135 156 134 156 0.97

2 15 2.3e-05 0.0019 18.5 1.3 2 23 161 182 160 182 0.98

3 15 1.9e-05 0.0016 18.8 2.5 2 23 189 210 188 210 0.97

4 15 0.00016 0.013 15.8 0.9 1 23 244 266 244 266 0.98

5 15 0.00042 0.034 14.5 2.8 1 23 272 294 272 294 0.98

6 15 9.3e-07 7.6e-05 22.9 3.3 1 23 300 322 300 322 0.97

7 15 7.7e-07 6.3e-05 23.2 1.8 1 23 328 350 328 350 0.96

8 15 2.9e-05 0.0024 18.2 0.6 1 23 356 378 356 378 0.98

9 15 2.7e-05 0.0022 18.3 6.8 1 23 384 406 384 406 0.97

10 15 1.2e-07 9.8e-06 25.7 0.9 1 23 411 433 411 433 0.97

11 15 0.00047 0.039 14.4 0.2 1 23 439 461 439 461 0.97

12 15 1.5e-06 0.00013 22.2 5.6 1 23 467 489 467 489 0.96

13 15 2e-06 0.00016 21.9 1.9 1 23 495 517 495 517 0.98

14 15 7.8e-06 0.00064 20.0 0.7 1 23 523 545 523 545 0.98

15 15 0.0003 0.025 15.0 2.3 1 23 551 574 551 574 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.031	2.5	8.7	0.5	2	23	135	156	134	156	0.97
2	15	2.3e-05	0.0019	18.5	1.3	2	23	161	182	160	182	0.98
3	15	1.9e-05	0.0016	18.8	2.5	2	23	189	210	188	210	0.97
4	15	0.00016	0.013	15.8	0.9	1	23	244	266	244	266	0.98
5	15	0.00042	0.034	14.5	2.8	1	23	272	294	272	294	0.98
6	15	9.3e-07	7.6e-05	22.9	3.3	1	23	300	322	300	322	0.97
7	15	7.7e-07	6.3e-05	23.2	1.8	1	23	328	350	328	350	0.96
8	15	2.9e-05	0.0024	18.2	0.6	1	23	356	378	356	378	0.98
9	15	2.7e-05	0.0022	18.3	6.8	1	23	384	406	384	406	0.97
10	15	1.2e-07	9.8e-06	25.7	0.9	1	23	411	433	411	433	0.97
11	15	0.00047	0.039	14.4	0.2	1	23	439	461	439	461	0.97
12	15	1.5e-06	0.00013	22.2	5.6	1	23	467	489	467	489	0.96
13	15	2e-06	0.00016	21.9	1.9	1	23	495	517	495	517	0.98
14	15	7.8e-06	0.00064	20.0	0.7	1	23	523	545	523	545	0.98
15	15	0.0003	0.025	15.0	2.3	1	23	551	574	551	574	0.97

Sequence Information

Coding Sequence: ATGGAAGATTTTAAAGTGAAAGATGAACCGATGGATGCATTAAACATAGACAGTCAGGTTATGGACGAAAACATTGTAAGCGTTGTACTTAAAGAAGAACCTGGCGATAGATTTGATCCCGACTACATGGAGGACATCTGCTCCGGTACATTCGAGAAGGTATTTTTACCTATCGAACAAAACGACGTTGACTTTTCTAATGAAATGGTAAAATTGGAATTGGACGGCGAATCTAGCAGTCATCCAAATTGGGCAGCTCATATCGCTAATGCCAATCTCTGTGACAAAGAGGACGGGGCTATACAAAGGTGTTTGGCCAATGCAAATTTCACCCAGTCACAAGACACAGACAAGCACCCCGGTTTTTGCACGAACGGACAGCAACCCAAGTTTTATAAAATCCAATGTTCTATCTGCAAGAAGTGGTTCTTGAACAACGATTCGATGGTTACACATTTGAGAATGCACTGCAGCGGCAGCCAGTGCGAGGTTTGCCAGCAGAATTTCCAAGACAGTTCGAGtttgcacgcccatatgttgacccatgttggaatgaatccactcgagtgcaatgtttgtcagaaaagattcgcttacaaatggtgtttgcgcagtcacatgcagatgcacgtactggaaaagccgtacgacgctgaggcgttacaggaagcgtacatgaagcgaccagattctgagaatgatcagtcgatcaacgctgaggacagaatattcgagtgtgacgtgtgtcacgcgattttcaaggagaagctcagcttgaaccggcacgtgctcacccataccgaggaaaggttgtacaaatgcgacatatgtttcgtgactttccgcgaaaaggcgaaattgcatacgcatatgacgttgcacgggggaagtaaacagttcaaatgcaccatgtgtcataggtcgttcacgcagaaaacggcgttgaacaatcacatgctggcacacagcggcgagaaaccccatgcgtgcaatatctgcgagaaaacatacaaacggaaatcggaactgattcggcacacgatggtgcacaccggcgagagaccgtacgaatgtaaagaatgcctaatgacttttcgggagaaggcgaaactcaattcccatatgttggtgcatacgggcgaaaagccgcacgagtgtcacatttgtcataaagcctgcgcgcgaaaatcggatctcaacagccacatgttgctgcacaccggcggccaatacgactgcaaggtgtgcgacaaaatattcacacgcagatcggacctgaatcggcacaccctgatacacaccggcgagaaaccgttcgcctgcgagctatgcgagatggcgttcagagagaagactagactgaattctcacatgctaatacacaccggtgacaagaggcacgcgtgccacatttgtcagaaaacgttcaaggagaagtcctcgttgcggaaacacatgctaagccacacgggtgacagaccgtacgaatgttacgtgtgtcacaaggcgttcacccagaaaacgacactgaacagccacatattagtccacgcaggtgaaagaccgtacgaatgtagcgcatgccagaaaatctttaaggataaagcaacattgaaaaagcatttatcggtgcacattaatgagaaaacacacgagtgtctgatctgtttaaaaaagtttgcccacaaagctgcattaaatagtcatttatCGACAAATCATACGTCCTAA
Protein Sequence: MEDFKVKDEPMDALNIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKVFLPIEQNDVDFSNEMVKLELDGESSSHPNWAAHIANANLCDKEDGAIQRCLANANFTQSQDTDKHPGFCTNGQQPKFYKIQCSICKKWFLNNDSMVTHLRMHCSGSQCEVCQQNFQDSSSLHAHMLTHVGMNPLECNVCQKRFAYKWCLRSHMQMHVLEKPYDAEALQEAYMKRPDSENDQSINAEDRIFECDVCHAIFKEKLSLNRHVLTHTEERLYKCDICFVTFREKAKLHTHMTLHGGSKQFKCTMCHRSFTQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRRSDLNRHTLIHTGEKPFACELCEMAFREKTRLNSHMLIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPYECSACQKIFKDKATLKKHLSVHINEKTHECLICLKKFAHKAALNSHLSTNHTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00087361;
80% Identity: iTF_00762696;