Basic Information

Insect: Dinoponera quadriceps
Gene Symbol: -
Assembly: GCA_001313825.1
Location: NW:53624-57334[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.023 1.4 8.8 0.5 2 23 92 113 91 113 0.97

2 14 4.5e-06 0.00027 20.5 0.8 2 23 118 139 117 139 0.98

3 14 1.9e-05 0.0011 18.5 2.3 2 23 146 167 145 167 0.96

4 14 1.1e-05 0.00068 19.2 1.6 1 23 200 222 200 222 0.98

5 14 1.3e-06 7.5e-05 22.2 0.8 1 23 254 276 254 276 0.97

6 14 1e-06 6e-05 22.5 1.7 1 23 282 304 282 304 0.96

7 14 2.2e-05 0.0013 18.3 0.6 1 23 310 332 310 332 0.98

8 14 2e-05 0.0012 18.4 6.8 1 23 338 360 338 360 0.97

9 14 5.6e-08 3.3e-06 26.5 1.0 1 23 365 387 365 387 0.97

10 14 0.00013 0.0074 15.9 0.2 1 23 393 415 393 415 0.97

11 14 6.4e-07 3.8e-05 23.1 5.6 1 23 421 443 421 443 0.96

12 14 1.4e-06 8.5e-05 22.0 2.0 1 23 449 471 449 471 0.98

13 14 3.1e-06 0.00018 21.0 0.9 1 23 477 499 477 499 0.98

14 14 0.0017 0.1 12.4 3.4 1 23 505 528 505 528 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.023	1.4	8.8	0.5	2	23	92	113	91	113	0.97
2	14	4.5e-06	0.00027	20.5	0.8	2	23	118	139	117	139	0.98
3	14	1.9e-05	0.0011	18.5	2.3	2	23	146	167	145	167	0.96
4	14	1.1e-05	0.00068	19.2	1.6	1	23	200	222	200	222	0.98
5	14	1.3e-06	7.5e-05	22.2	0.8	1	23	254	276	254	276	0.97
6	14	1e-06	6e-05	22.5	1.7	1	23	282	304	282	304	0.96
7	14	2.2e-05	0.0013	18.3	0.6	1	23	310	332	310	332	0.98
8	14	2e-05	0.0012	18.4	6.8	1	23	338	360	338	360	0.97
9	14	5.6e-08	3.3e-06	26.5	1.0	1	23	365	387	365	387	0.97
10	14	0.00013	0.0074	15.9	0.2	1	23	393	415	393	415	0.97
11	14	6.4e-07	3.8e-05	23.1	5.6	1	23	421	443	421	443	0.96
12	14	1.4e-06	8.5e-05	22.0	2.0	1	23	449	471	449	471	0.98
13	14	3.1e-06	0.00018	21.0	0.9	1	23	477	499	477	499	0.98
14	14	0.0017	0.1	12.4	3.4	1	23	505	528	505	528	0.97

Sequence Information

Coding Sequence: ATGGAGGATATTTGCTCTGGTACTTTCGAGAAGGTATTTCTGCCTATCGAAAACAATGAAGTGGATTTCTCCAACGAAATGGTAAAGTTAGAGTTGGAAGGAGAATCTACCAGTCATCATAATTGGACGGCACAAATAAATGCTAATTTATGCGACAAGGAAGATAGCGTAATGCAACGATGTTTGGCTAACACAAATTTTCTACAAGCACAAGACCCTGAGAAGCACCACGGATTTTGTCAGAACGGACAACAagcaaaattttacaaaatacaaTGCTCAATTTGTAAGAAGTGGTTTCTAAACAATGATTCCATGGTAACACATTTAAGAATGCATTGCAGCGGAAGTCAGTGTGAGGTTTGCCAGCAGAATTTCCCCGATAACTCCAGTCTGCACGCCCATATGTTGACTCATGTTGGAATGAGCCCATTAGAGTGCAATATCTGTCAAAAAAGATTCGCTTATAAATGGTGCTTAAGAAGTCACATGCAACTACACGTATTGGATAAACCGTACGATTGCGATGCGTTGCAGCAAGCTTTTATGAAGCGGGCAGGTATGAACGATCAGATGATGCATATGGAGGAGAGACCTTTTGAGTGTGATGTGTGCCACGCGTCGTTTAAGGAGAAAATTACTTTAAATCGGCACATGTCCAGCCACGTGGGAGATAGATCCTATAAATGTGAAATTGCGGCATTTAGAGAAAAGGCAAAACTGAATATGCACATGCCGCTTCATATGGGGAATAAGCAATTCAAGTGTACGTTGTGTCACAGAGCGTTCGCTCAAAAGGCAGCGCTCAACAATCACATGTTGGCCCATAGCGGCGAAAAGCCGCACGCGTGCAACGTTTGTGAGAAAACGTACAAGAGAAAATCAGAATTAATTAGGCATACTATGGTTCACACCGGCGAGAGACCGTACGAGTGTAAGGAATGTTTGATGACTTTTCGTGAAAAAGCCAAATTAAATTCCCACATGCTGGTGCACACGGGAGAAAAGCCGCACGAGTGTCACATTTGTCATAAAGCGTGCGCACGGAAATCAGATTTAAATAGCCACATGTTGCTGCACACCGGTGGTCAATACGACTGCAAGGTCTGCGATAAGATTTTCACCAGGAAGTCGGATCTGAATAGACACACTCTGATACACACCGGTGAGAAGCCGTTTGCGTGCGATCTGTGCGATATGGCATTCAGGGAAAAAACCAGATTGAACTCTCATATGATCATACATACGGGCGACAAGCGGCATGCCTGCCACATTTGCAGCAAAAGCTTCAAGGAGAAATCGTCGTTGAGGAAACACATGTTAACCCACACCGGTGACAGACCGTACGAATGCTATGTGTGTCACAAAGCCTTCACGCAGAAGACTACGCTAACCAGCCACATTCTGGTTCACGCCGGTGAGAGACCTTTCGAGTGTAGTTCTTgtcagaaaatatttaaagacaAAGCAGCGTTGAAAAAACACTTGTCGATGCACGTTAACGAGAAAACTCATGAATGTCTTATCTGTATGAAAAAGTTCGCTCATAAGACGGCATTAAATAATCACTTGTCCACGAGCCACATATCCTAA
Protein Sequence: MEDICSGTFEKVFLPIENNEVDFSNEMVKLELEGESTSHHNWTAQINANLCDKEDSVMQRCLANTNFLQAQDPEKHHGFCQNGQQAKFYKIQCSICKKWFLNNDSMVTHLRMHCSGSQCEVCQQNFPDNSSLHAHMLTHVGMSPLECNICQKRFAYKWCLRSHMQLHVLDKPYDCDALQQAFMKRAGMNDQMMHMEERPFECDVCHASFKEKITLNRHMSSHVGDRSYKCEIAAFREKAKLNMHMPLHMGNKQFKCTLCHRAFAQKAALNNHMLAHSGEKPHACNVCEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACDLCDMAFREKTRLNSHMIIHTGDKRHACHICSKSFKEKSSLRKHMLTHTGDRPYECYVCHKAFTQKTTLTSHILVHAGERPFECSSCQKIFKDKAALKKHLSMHVNEKTHECLICMKKFAHKTALNNHLSTSHIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_01087369; iTF_00769835;
80% Identity: -