Basic Information

Insect: Ooceraea biroi
Gene Symbol: -
Assembly: GCA_003672135.1
Location: NC:5154319-5158555[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.02 1.5 8.8 0.6 2 23 95 116 94 116 0.97

2 15 4.7e-06 0.00034 20.3 0.7 2 23 121 142 120 142 0.98

3 15 8.3e-07 6e-05 22.7 0.7 2 23 149 170 148 170 0.96

4 15 1.3e-06 9.3e-05 22.1 1.2 1 23 203 225 203 225 0.98

5 15 0.0014 0.098 12.5 0.3 1 20 231 250 231 253 0.95

6 15 1.2e-06 8.6e-05 22.2 2.3 1 23 259 281 259 281 0.97

7 15 5.3e-07 3.8e-05 23.3 1.8 1 23 287 309 287 309 0.96

8 15 2e-05 0.0014 18.3 0.6 1 23 315 337 315 337 0.98

9 15 1.9e-05 0.0013 18.4 6.8 1 23 343 365 343 365 0.97

10 15 5.2e-08 3.7e-06 26.5 1.0 1 23 370 392 370 392 0.97

11 15 4.4e-05 0.0032 17.2 0.4 1 23 398 420 398 420 0.97

12 15 1.1e-06 7.6e-05 22.3 5.6 1 23 426 448 426 448 0.96

13 15 3.2e-07 2.3e-05 24.0 1.8 1 23 454 476 454 476 0.98

14 15 0.00012 0.009 15.8 6.0 1 23 482 504 482 504 0.98

15 15 0.0011 0.081 12.8 2.4 1 23 510 533 510 533 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.02	1.5	8.8	0.6	2	23	95	116	94	116	0.97
2	15	4.7e-06	0.00034	20.3	0.7	2	23	121	142	120	142	0.98
3	15	8.3e-07	6e-05	22.7	0.7	2	23	149	170	148	170	0.96
4	15	1.3e-06	9.3e-05	22.1	1.2	1	23	203	225	203	225	0.98
5	15	0.0014	0.098	12.5	0.3	1	20	231	250	231	253	0.95
6	15	1.2e-06	8.6e-05	22.2	2.3	1	23	259	281	259	281	0.97
7	15	5.3e-07	3.8e-05	23.3	1.8	1	23	287	309	287	309	0.96
8	15	2e-05	0.0014	18.3	0.6	1	23	315	337	315	337	0.98
9	15	1.9e-05	0.0013	18.4	6.8	1	23	343	365	343	365	0.97
10	15	5.2e-08	3.7e-06	26.5	1.0	1	23	370	392	370	392	0.97
11	15	4.4e-05	0.0032	17.2	0.4	1	23	398	420	398	420	0.97
12	15	1.1e-06	7.6e-05	22.3	5.6	1	23	426	448	426	448	0.96
13	15	3.2e-07	2.3e-05	24.0	1.8	1	23	454	476	454	476	0.98
14	15	0.00012	0.009	15.8	6.0	1	23	482	504	482	504	0.98
15	15	0.0011	0.081	12.8	2.4	1	23	510	533	510	533	0.97

Sequence Information

Coding Sequence: ATGGACGATATTTGCTCCGGCACTTTCGAGAAGGGCACCTTATTCTTGCCTATCGAAAACAATGAGGTGGATTTCTCCAACGAAATGGTGAAGTTAGAGCTAGAAGGAGAATCCACCAGTCATCAGAACTGGACGGCACAGATAGCGAGTGCTAATTTGTGCGACAAGGAAGATGGTATGATGCAACGATGCTTGGCCAATGCAAATTTTTTACCGACGCAGGATCCGGACAAGCATCATGGATTCTGCCAGAACGGACAGCAGCCCAAGTATTACAAGTTACAGTGCTCAATCTGCAAGAAATGGTTCTTGAACAATGACTCCATGGTGACGCACCTGAGAATGCACTGTAGCGGAAGTCAATGCGAGGTTTGTCAACAAACTTTTCCCGATAACTCTAGCCTGCATGCCCACTTGTTAACTCACGTTGGAATGAGTCCGTTAGAGTGCAACATCTGCCAAAAAAGATTCGCTTATAAGGGGAGCTTAAGAAATCACATGCAATTACACGTATTGGATAAACCGTACGACTGCGACGCATTGCAGCAGGCTATCATGAAGCGAGCCGGTATGAACGAGCAGTTGATGCACATGGAAGAGAGGCCGTTCGAGTGCGACGTGTGCCACGCGACGTTCAAGGAGAAAGTCAATTTGAATCGGCACATGTCGATCCACACAGCCGACAGGCCCTACAAGTGCGAGATCTGCTTCGCGGCGTTCAGGGAGAAGGTGAAACTCACCATGCACATGCCACTTCACACGGGGAACAAACATTTCAAGTGTACGCTGTGTCACAGAGCGTTCACGCAGAAGACCGCGCTGAACAACCACATGTTGGCGCACAGTGGTGAGAAGCCGCACGCGTGTAACATCTGCGAGAAAAcgtataaaagaaaatcagAATTGATCAGGCACACTATGGTCCATACTGGCGAACGGCCGTACGAGTGCAAGGAGTGCCTGATGACCTTCCGCGAGAAAGCCAAATTGAATTCTCACATGTTGGTCCACACTGGTGAGAAGCCACACGAGTGTCATATCTGTCACAAAGCATGCGCACGAAAATCAGATTTGAACAGCCACATGCTGCTGCATACCGGTGGCCAGTACGATTGCAAGGTCTGCGACAAGATCTTCACCAGAAAGTCCGATTTGAACAGACACACTTTGATACACACCGGCGAGAAACCGTTCGCGTGCAATATGTGCGATATGGCATTCAGAGAGAAGACGAGATTAAATTCGCATATGCTCATACACACGGGCGATAAACGGCACGCGTGCCATATCTGTCAGAAAACGTTCAAGGAAAAATCATCGTTAAGAAAACACATGCTAAGCCACACCGGCGATAGACCGTACGAATGCTACGTGTGCCACAAGGCTTTCACACAGAAGTCCACATTAAACAGTCACATTCTGGTACACGCCGGTGAAAGACCCTTTGAGTGTTGTAGTTGTCacaaaatattcaaagacaAAGCAACGTTGAAAAAACACTTGTCGATGCACGTTAACGAAAAAACACACGAATGTCTTATTTGTATGAAAAAATTCGCCCATAAAGCAGCATTAAATAGTCACCTGTCCACGAGCCACTTGTCCTAA
Protein Sequence: MDDICSGTFEKGTLFLPIENNEVDFSNEMVKLELEGESTSHQNWTAQIASANLCDKEDGMMQRCLANANFLPTQDPDKHHGFCQNGQQPKYYKLQCSICKKWFLNNDSMVTHLRMHCSGSQCEVCQQTFPDNSSLHAHLLTHVGMSPLECNICQKRFAYKGSLRNHMQLHVLDKPYDCDALQQAIMKRAGMNEQLMHMEERPFECDVCHATFKEKVNLNRHMSIHTADRPYKCEICFAAFREKVKLTMHMPLHTGNKHFKCTLCHRAFTQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACNMCDMAFREKTRLNSHMLIHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKSTLNSHILVHAGERPFECCSCHKIFKDKATLKKHLSMHVNEKTHECLICMKKFAHKAALNSHLSTSHLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00899004;
80% Identity: -