Basic Information

Insect: Anoplolepis gracilipes
Gene Symbol: -
Assembly: GCA_031304115.1
Location: JAPWJP010001755.1:2730153-2732043[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.036 6.6 8.7 0.5 2 23 136 157 135 157 0.97

2 15 9.4e-07 0.00017 23.1 1.3 2 23 162 183 161 183 0.98

3 15 5e-06 0.00091 20.8 2.0 2 23 190 211 189 211 0.96

4 15 9.4e-06 0.0017 20.0 2.6 1 23 242 264 242 264 0.98

5 15 0.0074 1.4 10.8 0.3 1 20 270 289 270 292 0.95

6 15 5.2e-06 0.00095 20.8 2.1 1 23 298 320 298 320 0.97

7 15 9e-07 0.00016 23.2 1.8 1 23 326 348 326 348 0.96

8 15 3.4e-05 0.0062 18.2 0.6 1 23 354 376 354 376 0.98

9 15 8.8e-06 0.0016 20.0 4.3 1 23 382 404 382 404 0.97

10 15 8.8e-08 1.6e-05 26.3 1.0 1 23 409 431 409 431 0.97

11 15 0.00015 0.027 16.2 0.5 1 23 437 459 437 459 0.96

12 15 1.8e-06 0.00033 22.2 5.6 1 23 465 487 465 487 0.96

13 15 2.3e-06 0.00041 21.9 1.9 1 23 493 515 493 515 0.98

14 15 3e-06 0.00055 21.5 0.9 1 23 521 543 521 543 0.97

15 15 0.0014 0.25 13.1 3.4 1 23 549 572 549 572 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.036	6.6	8.7	0.5	2	23	136	157	135	157	0.97
2	15	9.4e-07	0.00017	23.1	1.3	2	23	162	183	161	183	0.98
3	15	5e-06	0.00091	20.8	2.0	2	23	190	211	189	211	0.96
4	15	9.4e-06	0.0017	20.0	2.6	1	23	242	264	242	264	0.98
5	15	0.0074	1.4	10.8	0.3	1	20	270	289	270	292	0.95
6	15	5.2e-06	0.00095	20.8	2.1	1	23	298	320	298	320	0.97
7	15	9e-07	0.00016	23.2	1.8	1	23	326	348	326	348	0.96
8	15	3.4e-05	0.0062	18.2	0.6	1	23	354	376	354	376	0.98
9	15	8.8e-06	0.0016	20.0	4.3	1	23	382	404	382	404	0.97
10	15	8.8e-08	1.6e-05	26.3	1.0	1	23	409	431	409	431	0.97
11	15	0.00015	0.027	16.2	0.5	1	23	437	459	437	459	0.96
12	15	1.8e-06	0.00033	22.2	5.6	1	23	465	487	465	487	0.96
13	15	2.3e-06	0.00041	21.9	1.9	1	23	493	515	493	515	0.98
14	15	3e-06	0.00055	21.5	0.9	1	23	521	543	521	543	0.97
15	15	0.0014	0.25	13.1	3.4	1	23	549	572	549	572	0.97

Sequence Information

Coding Sequence: ATGGAAGGTTTTAAGGTGAAAGATGAACCGATGGATGCATTAGCCATAGACAGTCAGGTTATGGATGAGAACATTGTGAGCGTCGTGCTTAAGGAGGAACCTGGTGACAGATTTGATCCCGACTACATGGAGGATATTTGCTCCGGCACTTTCGAGAAGGGCACTTTATTCCTGCCTATCGAAAACAATGAGGTGGATTTCTCCAACGAgatgGTAAAGTTAGAGTTGGAAGGAGAATCTACTAGCCACCAGAATTGGGCAGCGCAAATAGCGAGTGCAAATTTGTGTGACAAGGAGGATGGTGTGATGCAACGATGTTTGgctaatacaaattttatacaaacacaGGACCCTGATAAGCATGGATTCTGTCAAAATGGTCAGCagacgaaattttataaaatacaatgctCAATTTGCAAGAAATGGTTTCTGAACAATGATTCCATGGTGACGCACCTGAGAATGCACTGTAGCGGAAATCAATGTGAGGTTTGCCAGCAAAGTTTTTCTGACAACTCTAGCCTGCACGCCCACATGTTAACACACGTTGGAATGAGTCCGTTGGAATGTCACATCTGCCAAAAGAGATTCGCATACAAGTGGAGCTTGAGAAGTCACATGCAATTACACGTATTGGACAAACCGTACGATTGTGACGCGCTGCAGCAGGCTTTCATGAAGCGAGCGGGCTTAAACGATCAAATGATGGACGAGAGATACTTTGAATGTGACGTATGTCACATGACGTTCAAGGAGAAACTCAATTTAAATCGACACATGTCCAGTCACGCGACGGACAGGCCCTACAAATGCGCGGTCTGCTTCGAGGCGTTTAAGGAGAAGGCAAAACTGAACATGCATCTGCCGCTTCACGCGGTGAACAAACATTTCAAATGCACGCTCTGTCATAGATCCTTCGCTCAGAAAACGGCGCTCAGCAATCACATGCTGGCTCACAGTGGCGAGAAACCGCACGCCTGTAACATCTGCGAGAAAACGTACAAAAGGAAATCGGAATTGATCAGGCATACCATGGTACATACCGGTGAGAGACCTTACGAGTGCAAGGAATGCCTGATGACCTTCCGCGAGAAGGCCAAATTAAATTCGCACATGCTCGTTCACACAGGCGAGAAGCCGCACGAGTGTCAGATCTGTCACAAGGCGTGCGCGCGAAAATCGGATCTGAACAGTCACATGCTAATCCACACCGGCGGTCAGTACGACTGCAAGGTCTGCGACAAGATCTTCACGAGGAAGTCGGATCTGAACAGACACACCCTGATACACACCGGCGAGAAGCCGTTCGCGTGCAATATGTGCGACATGGCGTTCCGGGAGAAGACGAGATTGAATTCGCACATGCTTTTACATACGGGCGACAAGCGGCACGCCTGTCACATCTGCCAGAAGACGTTCAAGGAGAAATCGTCGTTGAGGAAACACATGTTAAGTCACACCGGCGACCGACCGTACGAGTGCTACGTGTGTCACAAGGCCTTCACGCAGAAAACTACTTTGAACAGCCACATTTTGGTCCATGCTGGCGAGAGACCCTTCGATTGTAGTACTTGTCAGAAAATATTCAAGGACAAAGCAGCGCTGAAAAAGCACCTGTTGATGCACGTTAACGAGAAAACACACGAATGTCTTATTTGTATGAAGAAGTTCACTCATAAAGCAGCATTAAATAGTCACCTATCCACGAATCACATATCCTAA
Protein Sequence: MEGFKVKDEPMDALAIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKGTLFLPIENNEVDFSNEMVKLELEGESTSHQNWAAQIASANLCDKEDGVMQRCLANTNFIQTQDPDKHGFCQNGQQTKFYKIQCSICKKWFLNNDSMVTHLRMHCSGNQCEVCQQSFSDNSSLHAHMLTHVGMSPLECHICQKRFAYKWSLRSHMQLHVLDKPYDCDALQQAFMKRAGLNDQMMDERYFECDVCHMTFKEKLNLNRHMSSHATDRPYKCAVCFEAFKEKAKLNMHLPLHAVNKHFKCTLCHRSFAQKTALSNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECQICHKACARKSDLNSHMLIHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACNMCDMAFREKTRLNSHMLLHTGDKRHACHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPFDCSTCQKIFKDKAALKKHLLMHVNEKTHECLICMKKFTHKAALNSHLSTNHIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00730223;
80% Identity: -