Basic Information

Insect: Perdita meconis
Gene Symbol: -
Assembly: GCA_030770465.2
Location: JASKOS020000021.1:2270532-2272421[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.079 14 7.5 0.5 2 23 134 155 133 155 0.97

2 15 3e-05 0.0051 18.3 1.4 2 23 160 181 159 181 0.98

3 15 8.5e-06 0.0015 20.0 2.5 2 23 188 209 187 209 0.97

4 15 6.8e-06 0.0012 20.3 1.7 1 23 242 264 242 264 0.98

5 15 0.00011 0.019 16.5 0.3 1 23 270 292 270 292 0.98

6 15 1.4e-06 0.00024 22.5 2.4 1 23 298 320 298 320 0.97

7 15 8.6e-07 0.00015 23.2 1.8 1 23 326 348 326 348 0.96

8 15 3.2e-05 0.0056 18.2 0.6 1 23 354 376 354 376 0.98

9 15 3e-05 0.0053 18.3 6.8 1 23 382 404 382 404 0.97

10 15 8.4e-08 1.5e-05 26.3 1.0 1 23 409 431 409 431 0.97

11 15 0.00015 0.026 16.1 0.2 1 23 437 459 437 459 0.97

12 15 9.5e-07 0.00017 23.0 5.8 1 23 465 487 465 487 0.97

13 15 2.2e-06 0.00038 21.9 1.9 1 23 493 515 493 515 0.98

14 15 1.3e-05 0.0022 19.5 0.9 1 23 521 543 521 543 0.98

15 15 0.00024 0.041 15.5 2.3 1 23 549 572 549 572 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.079	14	7.5	0.5	2	23	134	155	133	155	0.97
2	15	3e-05	0.0051	18.3	1.4	2	23	160	181	159	181	0.98
3	15	8.5e-06	0.0015	20.0	2.5	2	23	188	209	187	209	0.97
4	15	6.8e-06	0.0012	20.3	1.7	1	23	242	264	242	264	0.98
5	15	0.00011	0.019	16.5	0.3	1	23	270	292	270	292	0.98
6	15	1.4e-06	0.00024	22.5	2.4	1	23	298	320	298	320	0.97
7	15	8.6e-07	0.00015	23.2	1.8	1	23	326	348	326	348	0.96
8	15	3.2e-05	0.0056	18.2	0.6	1	23	354	376	354	376	0.98
9	15	3e-05	0.0053	18.3	6.8	1	23	382	404	382	404	0.97
10	15	8.4e-08	1.5e-05	26.3	1.0	1	23	409	431	409	431	0.97
11	15	0.00015	0.026	16.1	0.2	1	23	437	459	437	459	0.97
12	15	9.5e-07	0.00017	23.0	5.8	1	23	465	487	465	487	0.97
13	15	2.2e-06	0.00038	21.9	1.9	1	23	493	515	493	515	0.98
14	15	1.3e-05	0.0022	19.5	0.9	1	23	521	543	521	543	0.98
15	15	0.00024	0.041	15.5	2.3	1	23	549	572	549	572	0.97

Sequence Information

Coding Sequence: ATGGAAGAttataaagtgaaaaatgaaCCAATGGATGCATTAATAGACAGTCAGGTTATGGACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCCGACTATATGGAGGACATCTGCTCTGGTACATTCGAGAAGGTATTTTTACCTatcgaaaataatgaagttGACTTCTCTAATGAAATGGTAAAACTGGAATTGGATGGCGAATCCAGTAGTCATCAGAATTGGACGGCTCAGATAGCCAACGCGAATTTATGCGATAAGGAAGATGCTGCTATGCAAAGATGTTTGACAAGCGCTAATTTTGCTCAACCGCAGGACATTGAGAAGCATTCTGGATTTTGTATAAACGGACAACAGCCGAAATTTTACAAGATACAATGCTCCATCTGCAAGAAATGGTTCTTAAACAACGATTCGATGGTTACTCACTTGAAAATGCACTGCAGCGGAAATCAGTGCGAAGTTTGTCaacaaaactttcaagacagTTCCAGTCTCCACGCTCACATGTTAACGCACGTTGGAATGAGTCCGCTGGAGTGCAACATTTGTCAAAAACGATTTGCTTACAAATGGTGTCTACGTAATCACATGCAAATGCACGTGGTGGAAAAACCGTTCGACGATCCTTTGCATCAATCTTTCATGAAGAGGCCGGATACTGAAAACGAACAGTCGATGAATATAGAGGAAAGATTGTTCGAATGCGATCTTTGTCACGCGACGTTCAAAGGGAAATCTAGTCTGAATCGACATGTGCTTACTCATACCGATGAAAGGCCGTACAAGTGTGACATATGTTTCGCGATGTTCcgcgaaaaaggaaaattaaatatacacatGGCGCTGCACGGCGGTAATAAACCGTTCAAATGTACCATGTGTCACAGAGCGTTCACGCAGAAGACTGCGCTGAACAATCACATGCTGGCGCACAGCGGCGAAAAGCCGCACGCGTGCAACATTTGCGAGAAAACGTACAAACGGAAATCGGAGTTGATAAGGCATACGATGGTTCACACTGGCGAAAGACCGTACGAGTGCAAAGAATGCCTGATGACGTTTCGGGAGAAGGCAAAATTGAATTCTCACATGCTCGTGCATACGGGCGAAAAGCCGCACGAGTGTCACATATGTCACAAAGCGTGCGCGCGAAAATCCGATCTCAACAGCCACATGCTGTTGCACACCGGCGGCCAATACGATTGTAAAGTTtgcgataaaatatttactcgcAAATCGGATTTGAATCGACACACTTTAATACACACGGGCGAGAAACCGTTCGCTTGCGAGTTGTGCGACATGGCCTTTAGAGAAAAGACTAGATTAAATTCCCATATGCTGATACATACCGGTGATAGAAGACACGTCTGTCACATTTGTCAGAAAACTTTCAAAGAGAAATCCTCCTTGAGGAAACACATGTTGAGTCATACAGGGGATCGACCGTACGAATGTTACGTATGTCATAAAGCCTTCACTCAGAAAACAACACTAAACAGCCACATATTGGTACACGCGGGAGAAAGACCGTACGAGTGTAGCGCGTgtcagaaaatattcaaagacaGAGCAACGTTGAAGAAGCATTTATCTATgcatataaatgaaaaaactcACGAATGCTTGATCTGTTTAAAGAAATTCGCCCATAAAGCTGcgttaaataatcatttatcAACAAATCATACGTCTTAA
Protein Sequence: MEDYKVKNEPMDALIDSQVMDENIVSVVLKEEPGDRFDPDYMEDICSGTFEKVFLPIENNEVDFSNEMVKLELDGESSSHQNWTAQIANANLCDKEDAAMQRCLTSANFAQPQDIEKHSGFCINGQQPKFYKIQCSICKKWFLNNDSMVTHLKMHCSGNQCEVCQQNFQDSSSLHAHMLTHVGMSPLECNICQKRFAYKWCLRNHMQMHVVEKPFDDPLHQSFMKRPDTENEQSMNIEERLFECDLCHATFKGKSSLNRHVLTHTDERPYKCDICFAMFREKGKLNIHMALHGGNKPFKCTMCHRAFTQKTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLLHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACELCDMAFREKTRLNSHMLIHTGDRRHVCHICQKTFKEKSSLRKHMLSHTGDRPYECYVCHKAFTQKTTLNSHILVHAGERPYECSACQKIFKDRATLKKHLSMHINEKTHECLICLKKFAHKAALNNHLSTNHTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539746;
90% Identity: iTF_00087361;
80% Identity: -