Lace011300.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptothorax acervorum
Gene Symbol
Hr39
Assembly
GCA_035220615.1
Location
JASTWQ010000073.1:390610-394749[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 1.2 2.9e+04 -4.5 8.4 124 167 36 74 19 96 0.55
2 5 2 4.9e+04 -5.6 10.8 82 164 308 398 231 441 0.63
3 5 2 4.9e+04 -7.5 8.9 77 143 443 509 405 542 0.39
4 5 4e-08 0.00099 20.1 0.0 1 21 609 629 609 634 0.92
5 5 2.5e-70 6.1e-66 225.0 0.0 190 408 792 1001 747 1001 0.92

Sequence Information

Coding Sequence
ATGTCAGAGCAAAACGGGCCCAGCGAGGGCCCAGGGCCAGGGCCCGGCTCGGATTCGGGCTGGTGGCCAAACACGCAGCCTTGGAAATCGTCGGCGGCCGCCTCGTCGTCGACTTCGTCGACTCCCACTTCGGCGGCAGGTTCCGCATCCGTCTCTGTATCCTGCTCCGCGTCCAGCTCATCCTCGACGAGCTCATCTTCCACCTCGGCCAACTCATCCGCGACCTGTTGTCCCTCATCCTGCATCGGCGTGTCCTGCACGATGAGCCCGAGCCGCTCCACGGAAACGGGGAAAAACGTGTCCGTCACCACTATTAACGTACCGCCCAATCAAGAAATGCACGATGGTAAAGGAGTATGTAAATATCTCGGGGGACAGAATGGCGTGACGGTGTCGGTGGTATCGACCTCGGTACTAGGATGTGGAAACGCGAATGCCGTCCCGTCAAGCGGAATCTGCACGAATACGGGACCGCATAGTATCGGTATCGGAATCGGCGGCATCCTCGCCGCGAACGCGGCCGACATCGATGATCTCGAGGACAGCGACGGCGAGATCAGCAAGATTGACTTTAGAGGCGTCAATCTACGTTCGAAGAAGAAACGCGACGTATCGGGTAATCAGAATGGCGACAAGATCGGTGACGGAGAGGCAAACGGCGACGGCGGAGGATGCTGCGATGACAATTCACAACAGCAGCCAGAGAGGCCTATGTCATGGGAGGGTGAACTATCGGACCAAGAAATGTCTTCCAATACAATTACTAATCAGGACCACAATGAGGAAACGTCTATGGAGGGGGTTCAAGTATGCAGCACGAGCCCTGGGCCCATGGAACAGAAGTTTCCTATTAAGTCGGAGCCGGATTTTCGATCTAGCCCAGGTTTCACAATAGGATCCTTTCACGATGGTGGACTGCCCATGACACACAATCAACAActgcagcaacagcaacagcaacaacgcGGTATCGAAAATCTCGAACAGACGCAACAGAGCGACCTACCGCTTCTCGTAGGCAAGCTTCTCGGTGGATACAACAACTCAACGCCTAATCACAGTCCTGTTCTCAATCCGCGACATCATCTAACTAAACACAGTCATACTAGATCGCAGGTGCCGTCACCAGATTCCGCCATTCATTCTACGTATAGTGTCTTCAGTTCACCGACACAGAGCCCCCACGCGGCACGGCATTCCGCCCTAGGAGCGGGTAGTCCGATACCCTCCTCGTCGCTGTCCCTCTCTCGACACAGCTTCAACAATTCGACTTCCTCGTTATCCCTATCGCTGTCGCATTCGCTTTCGAGGAATAATTCCGACGCTTCCAGTAGCTGTTACAGCTACGGCTCGCTTAGCCCGCCTACGCATTCACCCGTCCAGCAGTCGAGACATCCGCATTCGCACTCGCAACATCATCAGCATCAAGTGGCGCAAGGTAGTCCGCTACATCTACCAGTCTCGTCCGCAGTCGCCGCACATCATTACTCGTCCTCTTCCGTACCAGGCTCGGAACTATCGCCGGACGGCCATCCCGTCGCGGAGGATCAGGAAGACTGTAGGATACCCTCAGCGCCGTCGGGTATCTCTACAAGGCAACAACTGATAAACAGCCCCTGCCCGATTTGCGGCGACAAGATAAGCGGCTTCCATTACGGCATCTTCTCGTGTGAATCGTGCAAGGGATTCTTCAAACGCACCGTCCAGAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGCCCGGTCACCGTGGCCACGAGGAAGAAGTGCCCGGCCTGCCGCTTCGACAAGTGCCTCAACATGGGTATGAAACTCGAGGCGATCAGGGAGGATCGTACCAGAGGCGGTAGAAGCACTTATCAATGTACCTACACTCTACCGGCAAATCTCGTTGGTAGTCCTGCCGGCGGTATGACCGGTGAAAAACTGACGGCGGGTAATTGCAGTCCGGCACCGGCCGGTAGCGAGCACCATTATTCCGTTAGATATCATTCAAATCATTCTCACAAGATGCAAGTAGTACCTCAACTTTTGCAAGACATCATGGATGTAGAACATCTTTGGCATTATAACGACAATGATCGGGTAAGCGGCAGTGGAGGGGTACTTGGAAGTGTAAGGAATAACAGTGGTGACAGTATGCTGTTCGGTGGATCCGGAAGTGGTCTGACGCCCAGCGGTATTGGAACCGCGGCCGGTATTGGCGCCGGAAACAACGGAGGTGCAGTGGAATGTTCGTCGAATGACTCTAGTAACGTCGATACTAATAGTAAGAGAGGAGAGACGGCGAGCCCTGCCGGTTCGACCACAACGGGAGCGTCTGATCAACATTCCACCAATGGCAATACCACCAACAATAGTAATTCTCAAATCGCCAGTAATTCCAATGGCAATTCAGCGCAGCATCCGGACTTTCTATCTAATCTGTGCAACATCGCGGATCATCGGCTTTATAAGATCGTCAAGTGGTGCAAGAGTCtgccattatttaaaaatatctctatCGACGATCAAATCTGTTTGTTGATCAACTCTTGGTGCGAGCTATTACTTTTCTCCTGCTGTTTTCGCAGCATGGGCACTCCCGGTGAGATAAGAGTGTCTCTTGGCAAGTCGATTACTCTAGAACAAGCAAGACAGCTTGGTTTAGCGACTTGCATCGAAAGGATGCTCGCTTTTACCGACAATCTGCGAAGACTGAGAGTAGACCAATACGAATATGTTGCAATGAAGGTGATCGTGCTGTTAACGTCCGATACAAGCGAATTAAAGGAGCCTGAGAAGGTCAGAGCTTCTCAGGAAAAAGCCCTTCAAGCACTGCAGCAATATACAATTGCGAGGTATCCAGAAATGCCTGCCAAATTCGGTGAACTATTGTTGAGAATTCCAGATCTGCAAAGAACATGTCAAGCAGGAAAAGAATTGCTCAGTGCAAAACGCGCCGAGGGAGAAGGCAGCTCGTTTAACCTTTTAATGGAATTGTTGAGAGGAGATCACTGA
Protein Sequence
MSEQNGPSEGPGPGPGSDSGWWPNTQPWKSSAAASSSTSSTPTSAAGSASVSVSCSASSSSSTSSSSTSANSSATCCPSSCIGVSCTMSPSRSTETGKNVSVTTINVPPNQEMHDGKGVCKYLGGQNGVTVSVVSTSVLGCGNANAVPSSGICTNTGPHSIGIGIGGILAANAADIDDLEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGDKIGDGEANGDGGGCCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPGFTIGSFHDGGLPMTHNQQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSTYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQSRHPHSHSQHHQHQVAQGSPLHLPVSSAVAAHHYSSSSVPGSELSPDGHPVAEDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGGMTGEKLTAGNCSPAPAGSEHHYSVRYHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRVSGSGGVLGSVRNNSGDSMLFGGSGSGLTPSGIGTAAGIGAGNNGGAVECSSNDSSNVDTNSKRGETASPAGSTTTGASDQHSTNGNTTNNSNSQIASNSNGNSAQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMGTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTDNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267641;
90% Identity
iTF_00765736; iTF_00885230; iTF_00765624; iTF_00126753; iTF_00127497; iTF_00127561; iTF_00126059; iTF_00128240; iTF_00125970; iTF_00129842; iTF_00129782; iTF_00129015; iTF_00126808; iTF_00128312; iTF_00129080; iTF_00265027; iTF_00265029; iTF_00264363; iTF_00264311; iTF_00265017; iTF_00265081; iTF_01520259; iTF_01520261; iTF_01520343; iTF_00016068; iTF_00014754; iTF_00014786; iTF_00016738; iTF_00016070; iTF_00016713; iTF_00015402; iTF_00015403; iTF_00016715; iTF_01476204; iTF_01476206; iTF_00015440; iTF_01476950; iTF_01476952; iTF_01476986; iTF_00016092; iTF_00014752; iTF_00385636; iTF_00385354; iTF_00385342; iTF_00898852; iTF_00898764; iTF_00898775; iTF_00898777; iTF_00181994; iTF_01476321; iTF_00181996; iTF_00182031; iTF_00868138; iTF_00868836; iTF_00868837; iTF_00868139; iTF_00867436; iTF_00868940; iTF_00867437; iTF_00867515; iTF_00868187; iTF_01077544; iTF_01077489; iTF_01077499; iTF_01077502; iTF_01254832; iTF_01254834; iTF_01254877; iTF_00109869; iTF_00109897; iTF_01245262; iTF_00280642; iTF_00730082; iTF_00730094; iTF_01245294; iTF_00730133; iTF_00730774; iTF_00280634; iTF_00729404; iTF_00730847; iTF_00729344; iTF_01015921; iTF_01015845; iTF_01409170; iTF_01408258; iTF_01408357; iTF_01407465; iTF_01406538; iTF_01406540; iTF_01405744; iTF_01409269; iTF_01407350; iTF_01406622; iTF_01405856; iTF_01477601; iTF_01477683; iTF_01477598; iTF_01523393; iTF_01523395; iTF_01523452; iTF_01229094; iTF_01229065; iTF_01228394; iTF_01228436; iTF_01228405; iTF_01228406; iTF_01355337; iTF_01355339; iTF_01355502; iTF_01422998; iTF_01422965; iTF_01421627; iTF_01421595; iTF_01423740; iTF_01423696; iTF_01354688; iTF_01354647; iTF_00181332; iTF_00181334; iTF_00181368; iTF_01099305; iTF_01099211; iTF_01099221; iTF_01099222; iTF_00182677; iTF_00182659; iTF_00417592; iTF_00417666; iTF_00280030; iTF_00280005;
80% Identity
iTF_00885230;