Pbar001672.1
Basic Information
- Insect
- Pogonomyrmex barbatus
- Gene Symbol
- Hr39
- Assembly
- GCA_000187915.1
- Location
- NW:119471-141307[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3 8.3e+03 -4.9 8.4 130 164 37 71 19 103 0.58 2 4 3 1.1e+04 -5.9 9.3 82 163 304 393 226 422 0.60 3 4 3 1.1e+04 -7.5 9.4 78 146 421 498 400 537 0.38 4 4 5.2e-73 1.9e-69 234.3 1.8 1 408 605 996 605 996 0.68
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCAGGGCCAGGGCCCGGTTCTGATTCGGGCTGGTGGCCAACCACGCAGACGTGGAAATCGTCAGCGGCCGCCTCGTCGTCGACTTCGTCAACTCCCACTTCAGCAGCCGGTTCAGCGTCCATCTCTGTCTCTTGCTCCGCGTCCAGCTCATCTTCGACGAGCTCCTCCACTTCAACCAACTCGTCTGCGACCTGCTGTCCCTCGTCCTGCATCGGCGTATCCTGTACGATGAGCCCAAGTCGCTCCACGGAGACGGGGAAAAACGTATCTGTCACCACCATTAACGTACCGCCTAATCAAGAAATGCATGATGGTAAAGGGGTATGTAAATATCTCGGGAGTCAAAATAGTGTAACCGTATCGGTGGTATCGGCCTCGGTACTAGGATGTGGAAATGTTCCGACAAGCGGAATCTGCACGAATACAGGACCGCATAGTATCGGCATTGGAATTGGTGGCATCCTCGCTGCGAACGCGGCTGACATTGATGATCCCGAGGACAGTGATGGCGAGATCAGCAAGATTGACTTTAGAGGTGTCAACCTACGCTCAAAGAAGAAACGCGACGTTTCGGGTAACCAGAATGGTGACAAAATTGGTGACGGAGACGCAAACGGCGACGGCGGAGGATGTTGCGATGACAATTCGCAACAGCAACCCGAGAGGCCCATGTCATGGGAGGGTGAACTATCGGACCAAGAAATGTCTTCCAATACAATTACTAATCAGgACCATAATGAGGAAACGTCTATGGAGGGGGTTCAAGTATGCAGCACAAGTCCTGGACCTATGGAACAAAAGTTTCCTATTAAATCAGAGCCGGATTTTCGATCTAGCCCAGGTTTTACAATAGGATCCTTTCACGACGGCGGCCTGCCCATGACACACAACCAGCAActacagcagcagcaacagcaacaacgcGGTATCGAAAATCTTGAACAGACTCAACAGAGCGACCTACCGCTTCTCGTAGGCAAGCTTCTTGGTGGATACAACAACTCAACGCCTAATCATAGTCCTGTCCTCAATCCGCGACATCATTTAACTAAACACAGTCATACTAGATCGCAGGTACCGTCACCAGATTCAGCCATTCATTCTGCGTATAGCGTCTTCAGTTCACCGACACAGAGTCCTCATGCGGCACGGCATTCCGCCCTTGGAGCGGGAAGTCCGATACCCTCGTCATCGCTGTCCCTTTCTCGGCACAGCTTCAACAACTCAACTTCCTCGCTATCCCTATCGCTATCGCATTCGCTTTCGAGGAACAACTCTGATGCTTCCAGTAGCTGTTATAGCTATGGCTCGCTTAGCCCGCCCACGCATTCACCTGTCCAGCAGCCGAGACATCCACATTCACATTCGCAACATCATCAGCATCAAGTGGCGCAAGGTAGTCCGCTACATCTACCAACCTCATCCGCAGTCGCCGCACATCATTATTCATCTTCTTCCGTGCCAGGCTCGGAACTATCGCCGGATGGTCATCCGGTCGCGGAGGATCAGGAAGATTGCAGGATACCCTCGGCGCCATCGGGTATCTCCACCAGGCAACAATTGATAAACAGTCCTTGTCCGATTTGCGGTGATAAGATAAGCGGCTTCCATTATGGCATCTTCTCGTGCGAATCGTGCAAGGGATTTTTCAAGCGCACCGTCCAGAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGTCCGGTCACTGTGGCCACGAGAAAAAAGTGCCCGGCCTGCCGCTTCGACAAGTGCCTCAACATGGGTATGAAACTCGAGGCGATCAGAGAGGATCGTACCAGAGGCGGTAGAAGCACTTATCAGTGTACCTACACCCTGCCGGCAAATCTCGTTGGTAGTCCTGCCGGTAGTATGAGCGGTGAAAAACTAACGACGGCAGGAAATTGTAGCCCGGCACCGGCTGGTAGCGAGCATCATTATTCCGTCAGATATCATTCGAATCATTCTCACAAGATGCAAGTGGTACCTCAACTCTTACAAGACATCATGGATGTGGAACATCTTTGGCATTATAATGATAACGATCGAATAAGCGGCAGTGGGGTACATGGGAATGCAAGGAATACTGGAAATGACATGCTGCTCGGTGGGCCTGGAAGTTGTTCAGCGTCTGGTGGAACCGGAACCACAACCGGTATTGGCGTCGGAAACAATGGAGCTGCAGTAGAATGTTCGTCGAATGACTCTAGTAATGTCGATACTAATAACAGAAGGGGAGAGACTGCGAGCCCCGCCAGTTCGACTTCCACGGGGACGCCCGATCAACATTCCACAAATGGCAATACCACCAGTAATAGTAATTCTCAAATTGCCAATAATTCCAATGGCAATTCAGCGCAGCATCAGGACTTTCTATCTAATTTGTGCAACATCGCGGATCATCGGCTCTATAAGATCGTCAAGTGGTGCAAGAGTCTGCCGTTATTCAAGAATATCTCGATTGATgatcaaatttgtttattaatcaattcttGGTGCGAGTTATTACTTTTCTCTTGCTGTTTTCGCAGCATGAGTACTCCTGGTGAAATAAGAGTATCTCTTGGCAAGTCAATTACCTTAGAACAAGCGAGACAGCTTGGTTTAGGGACTTGTATCGAGAGGATGCTCGCTTTTACCAACAATCTGCGAAGGCTGAGAGTAGACCAATACGAATATGTTGCAATGAAggtgATCGTGCTGTTAACGTCTGATACAAGCGAGTTAAAGGAGCCTGAGAAAGTCAGAGCTTCCCAGGAAAAGGCCCTTCAAGCGCTGCAGCAATATACAATTGCGAGGTATCCAGAAATGCCTGCCAAATTTGGTGAATTATTGTTGAGAATTCCAGATTTGCAAAGAACATGCCAAGCAGGAAAAGAATTGCTCAGTGCAAAACGCGCCGAGGGAGAAGGCAGCTCGTTTAACCTTTTAATGGAATTGTTGAGAGGAGATCACTAA
- Protein Sequence
- MSEQNGPSEGPGPGPGSDSGWWPTTQTWKSSAAASSSTSSTPTSAAGSASISVSCSASSSSSTSSSTSTNSSATCCPSSCIGVSCTMSPSRSTETGKNVSVTTINVPPNQEMHDGKGVCKYLGSQNSVTVSVVSASVLGCGNVPTSGICTNTGPHSIGIGIGGILAANAADIDDPEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGDKIGDGDANGDGGGCCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPGFTIGSFHDGGLPMTHNQQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHSHSQHHQHQVAQGSPLHLPTSSAVAAHHYSSSSVPGSELSPDGHPVAEDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGSMSGEKLTTAGNCSPAPAGSEHHYSVRYHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRISGSGVHGNARNTGNDMLLGGPGSCSASGGTGTTTGIGVGNNGAAVECSSNDSSNVDTNNRRGETASPASSTSTGTPDQHSTNGNTTSNSNSQIANNSNGNSAQHQDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLGTCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267641;
- 90% Identity
- iTF_00885153;
- 80% Identity
- iTF_01228394;