Amia021888.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphaenogaster miamiana
Gene Symbol
Hr39
Assembly
GCA_003063725.1
Location
NJRN01000064.1:745301-749554[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 1.4 1.2e+04 -4.2 9.4 125 165 31 72 20 93 0.72
2 6 3 2.5e+04 -7.9 12.5 84 163 307 392 226 436 0.49
3 6 3 2.5e+04 -11.2 13.4 70 141 412 502 363 537 0.40
4 6 5.8e-08 0.00048 20.1 0.0 1 21 604 624 604 630 0.92
5 6 0.65 5.4e+03 -3.1 0.0 88 113 661 686 636 697 0.67
6 6 1.7e-69 1.4e-65 222.8 0.0 186 408 778 994 732 994 0.93

Sequence Information

Coding Sequence
ATGTCAGAGCAAAACGGGCCCAGTGAGGGCCCAGGGCCAGGGCCCGGTTCTGATTCGGGCTGGTGGCCAAGCACGCAGACTTGGAAATCGTCGGCGGCCGCCTCGTCGTCGACTTCGTCGACTACCACTTCAGCGGCAGGTTCAGCATCCGTCTCTGTCTCCTGCTCTGCGTCCAGCTCATCCTCGACGAGCTCCTCCACCTCGACCAACTCGTCCGCGACCTGTTGTCCCTCGTCCTGCATCGGCGTGTCCTGCACGATGAGCCCAAGCCGTTCCACGGAGACGGGGAAAAACGTGTCCGTCACCACTATTAACGTACCGCCCAATCAAGAAATGCATGATGGTAAAGGGATATGTAAATATCTTGGGGGACAGAATGGCGTGACGGTGTCGGTAGTATCGACCTCGGTGCTGGGATGCGGAAACGCGAATGCTGTCCCGACAAGCGGAATCTGCACAAATAGGGGGTCGCATAGTATCGGTATCGGAATCGGTGGAATTCTCGCCGCGAACGCGGCCGACATCGATGATCCTGAGGACAGCGATGGCGAGATCAGCAAAATTGACTTTAGAGGTGTTAATCTACGTTCGAAGAAGAAACGCGACGTGTCCGGTAATCAGAATGGCGACAAGAACGGTGACGGAGATGCAAACGGCGACGGCGGTTGCGATGACAATTCGCAACAGCAGCCCGAGAGACCTATGTCATGGGAGGGTGAACTATCGGACCAAGAAATGTCTTCCAATACAATTACTAATCAGGACCACAATGAGGAAACGTCTATGGAGGGAGTTCAAGTATGCAGTACGAGTCCTGGGCCAATGGAACAAAAGTTTCCTATTAAGTCGGAGCCGGATTTTCGATCTAGCCCAGGTTTCACAATAGGATCCTTTCATGATGGTGGACTGCCCATGACACACAATCAACAAttgcagcaacaacaacagcaacaacgcAGTATCGAAAAACTCGAACAGACTCAACAGAGCGACCTACCGCTTCTCGTAGACAAGCTTTTTGAATACAACTCAACGCCTAATCACAGTCCTGTCCTCAATCCGCGACATCATCTAACTAAACACAGTCATACTAGATCACAGGTGCCGTCACCAGATTCCGCTATTCATTCTGCGTATAGCGTCTTCAGTTCACCAACACAGAGCCCCCACGCGGCACGGCATTCCGCCCTAGGAGCGGGCAGTCCGATACCCTCCTCGTCGTTGTCCCTCTCTCGACACAGCTTCAACAACTCGACTTCCTCATTATCCCTGTCGCTGTCGCATTCGCTTTCAAGGAACAACTCCGACGCTTCCAGTAGCTGCTATAGCTATGGCTCGCTTAGCCCGCCTACGCATTCACCCGTCCAGCAGCCGAGACATCCGCATTCGCACTCGCAACATCATCAGCATCAAGTGGTGCAAGGTAGTCCGCTGCATCTACCAGTCTCATCTGCAGTTGCCGCACATCATTACTCGTCCTCTTCCGTGCCAGGCTCGGAACTATCGCCGGACGGCCATCCCGTTGCGGAGGATCAAGAAGACTGTAGGATACCCTCGGCGCCGTCAGGTATCTCTACGAGGCAACAACTGATAAACAGTCCTTGCCCGATTTGCGGTGACAAGATAAGCGGCTTCCATTATGGTATCTTCTCGTGTGAATCGTGCAAGGGATTCTTCAAGCGCACCGTCCAGAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGTTGTCCGGTCACTGTGGCCACGAGGAAGAAGTGCCCGGCCTGCCGCTTCGATAAGTGCCTCAACATGGGTATGAAGCTCGAGGCAATTAGGGAGGATCGTACCAGAGGCGGTAGAAGCACTTATCAGTGTACCTATACTCTGCCGGCAAATCTCGTTGGTAGTCCTGCTGGCGGTATGACCAATGAAAAATTGACGGGGGGCAATTGCAGCCCGGCACCGACCGGTAGCGAACATCATTATTCCGTTAGATATCATTCGAATCATTCTCACAAGATGCAAGTAGTACCTCAACTTTTGCAAGACATCATGGATGTGGAACACCTTTGGCATTATAACGACAATGATCGGATAAGCAACAGTGGAGGAGTATTTGGAAGGAATATCGGTAGTGACAGTATGCTGCTTGCTGGACTCGGAAGTGGTCCGGCGCCTAGCGGTACAGGAACTGCAACCGGTATTGGTGCCGGAAACAATGCAGGTGCAGTGGAATGTTCATCGAATGACTCTAGCAACGTCGATACTAATAGCAGGAGAGGAGAGCCGGCGAGCCCCGCGGGCTCGACCTCAACAGGGGCGTCCGATCAACATTCCACAAATGGCAATACCACCAATAAAAGTAATTCTCAAATTACCAGTAATTCCAACGGCAATTCAGCGCAGCATCCGGACTTTCTATCTAATCTGTGCAACATCGCGGATCATCGGCTTTATAAGATTGTCAAGTGGTGCAAGAGTCTGCcattatttaagaatatctcGATCGATGATCAAATCTGTTTGTTGATCAACTCTTGGTGCGAGCTACTACTTTTCTCCTGCTGTTTCCATAGCATGAGCACTCCTGGTGAGATAAGAGTATCTCTTGGCAAGTCGATTACTCTAGAACAAGCAAGACAACTTGGTTTAGCGACTTGTATCGAGAGAATGCTCGCTTTTACCAACAATCTGCGAAGGCTGAGAGTAGACCAATACGAATATGTTGCAATGAAGgtGATCGTGCTGTTAACGTCTGATACAAGCGAATTAAAGGAGCCTGAGAAGGTTAGAGCTTCTCAGGAAAAGGCTCTTCAAGCACTGCAGCAATACACAATTGCGAGGTACCCAGAAATGCCCGCCAAATTTGGTGAACTATTGTTGAGAATTCCAGATCTGCAAAGAACGTGTCAGGCAGGAAAAGAATTGCTCAGTGCAAAACGCGCCGAGGGAGAAGGCAGCTCGTTTAACCTTTTAATGGAATTGTTGAGAGGAGATCACTGA
Protein Sequence
MSEQNGPSEGPGPGPGSDSGWWPSTQTWKSSAAASSSTSSTTTSAAGSASVSVSCSASSSSSTSSSTSTNSSATCCPSSCIGVSCTMSPSRSTETGKNVSVTTINVPPNQEMHDGKGICKYLGGQNGVTVSVVSTSVLGCGNANAVPTSGICTNRGSHSIGIGIGGILAANAADIDDPEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGDKNGDGDANGDGGCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPGFTIGSFHDGGLPMTHNQQLQQQQQQQRSIEKLEQTQQSDLPLLVDKLFEYNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHSHSQHHQHQVVQGSPLHLPVSSAVAAHHYSSSSVPGSELSPDGHPVAEDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGGMTNEKLTGGNCSPAPTGSEHHYSVRYHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRISNSGGVFGRNIGSDSMLLAGLGSGPAPSGTGTATGIGAGNNAGAVECSSNDSSNVDTNSRRGEPASPAGSTSTGASDQHSTNGNTTNKSNSQITSNSNGNSAQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFHSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267641;
90% Identity
iTF_00885153;
80% Identity
iTF_00128312;