Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: Hr39
Assembly: GCA_017141365.1
Location: JAEVLP010004775.1:72041-76032[-]

Transcription Factor Domain

TF Family: SF-like
Domain: zf-C4|SF-like
PFAM: AnimalTFDB
TF Group: Zinc-Coordinating Group
Description: The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.3 2.3e+04 -4.7 8.2 130 164 37 71 19 102 0.59

2 4 2 3.4e+04 -5.9 9.3 82 163 304 393 226 422 0.60

3 4 2 3.4e+04 -7.5 9.4 78 146 421 498 400 537 0.38

4 4 2.6e-73 4.4e-69 234.8 1.7 1 408 605 996 605 996 0.70

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.3	2.3e+04	-4.7	8.2	130	164	37	71	19	102	0.59
2	4	2	3.4e+04	-5.9	9.3	82	163	304	393	226	422	0.60
3	4	2	3.4e+04	-7.5	9.4	78	146	421	498	400	537	0.38
4	4	2.6e-73	4.4e-69	234.8	1.7	1	408	605	996	605	996	0.70

Sequence Information

Coding Sequence: ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCAGGGCCAGGGCCCGGTTCTGATTCGGGCTGGTGGCCAACCACGCAGACGTGGAAATCGTCAGCGGCCGCCTCGTCGTCGACTTCGTCAACTCCCACTTCAGCAGCCGGTTCAGCGTCCGTCTCTGTCTCTTGCTCCGCGTCCAGCTCATCTTCGACGAGCTCCTCCACTTCAACCAACTCGTCCGCGACCTGCTGTCCCTCGTCCTGCATCGGCGTATCCTGTACGATGAGCCCAAGTCGCTCCACGGAGACGGGGAAAAACGTATCTGTCACCACCATTAACGTACCGCCTAATCAAGAAATGCACGATGGTAAAGGGGTATGTAAATATCTCGGGGGTCAAAATGGTGTAACGGTATCGGTGGTATCGACCTCGGTACTAGGATGTGGAAATGTTCCGACAAGCGGAATCTGTACGAATACAGGACCGCATAGTATCGGCATTGGAATTGGTGGCATCCTCGCTGCGAACGCGGCTGACATTGATGATCCCGAGGACAGTGATGGCGAGATCAGCAAGATTGACTTTAGAGGTGTCAACCTACGCTCAAAGAAGAAACGCGACGTTTCGGGTAACCAGAATGGTGACAAAATTGGTGACGGAGACGCAAACGGCGACGGCGGAGGATGTTGCGATGACAATTCGCAACAGCAACCCGAGAGGCCCATGTCATGGGAGGGTGAACTATCGGACCAAGAAATGTCTTCCAATACAATTACTAATCAGGACCATAATGAGGAAACGTCTATGGAGGGGGTTCAAGTATGCAGCACAAGTCCTGGACCTATGGAACAAAAGTTTCCTATTAAATCAGAGCCGGATTTTCGATCTAGCCCAGGTTTTACAATAGGATCCTTTCACGACGGCGGCCTGCCCATGACACACAACCAGCAACTACAGCAGCAGCAGCAGCAACAACGTGGTATCGAAAATCTTGAACAGACTCAACAGAGCGACCTACCGCTTCTCGTAGGCAAGCTTCTTGGTGGATACAACAACTCAACGCCTAATCATAGTCCTGTCCTCAATCCGCGACATCATTTAACTAAACACAGTCATACTAGATCGCAGGTACCGTCACCAGATTCAGCCATTCATTCTGCGTATAGCGTCTTCAGTTCACCGACACAGAGTCCTCATGCGGCACGGCATTCCGCCCTTGGAGCGGGAAGTCCGATACCCTCGTCATCGCTGTCCCTTTCTCGGCACAGCTTCAACAACTCAACTTCCTCGCTATCCCTGTCGCTATCGCATTCGCTTTCGAGGAACAACTCTGATGCTTCCAGTAGCTGCTATAGCTATGGCTCGCTTAGCCCGCCCACGCATTCACCTGTCCAGCAGCCGAGACATCCACATTCACATTCGCAACATCATCAGCATCAAGTGGCGCAAGGTAGTCCGCTACATCTACCAACCTCATCCGCAGTCGCCGCACATCATTATTCATCTTCTTCCGTGCCAGGCTCGGAACTATCGCCGGATGGTCATCCGGTCGCGGAGGATCAGGAAGATTGCAGGATACCCTCGGCGCCATCGGGTATCTCCACCAGGCAACAATTGATAAACAGTCCCTGTCCGATTTGCGGTGATAAGATAAGCGGCTTCCATTATGGCATCTTCTCGTGCGAATCGTGCAAGGGATTTTTCAAGCGCACCGTCCAGAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGTCCGGTCACTGTGGCCACGAGAAAAAAGTGCCCGGCCTGCCGCTTCGACAAGTGCCTCAACATGGGTATGAAACTCGAGGCGATCAGAGAGGATCGTACCAGAGGCGGTAGAAGCACTTATCAGTGTACCTACACCCTGCCGGCAAATCTCGTTGGTAGTCCTGCCGGTAGTATGAGCGGTGAAAAACTAACGACGGCAGGAAATTGTAGCCCGGCACCGGCTGGTAGCGAGCATCATTATTCCGTCAGATATCATTCGAATCATTCTCACAAGATGCAAGTGGTACCTCAACTCTTACAAGACATCATGGATGTGGAACATCTTTGGCATTATAATGATAACGATCGAATAAGTGGCAGTGGGGTACCTGGGAATGCAAGAAATACTGGAAATGACATGCTGCTCGGTGGGCCTGGAAGTTGTTCAGCGTCTGGTGGAACCGGAACCACAACCGGTATTGGCGTCGGAAACAATGGAGCTGCAGTAGAATGTTCGTCGAATGACTCTAGTAATGTCGATACTAATAACAGAAGGGGAGAGACTGCGAGCCCCGCCAGTTCGACTTCCACGGGGACGCCCGATCAACATTCCACAAATGGCAATACCACCAGTAATAGTAATTCTCAAATTGCCAATAATTCCAATGGCAATTCAGCGCAGCATCAGGACTTTCTATCTAATTTGTGCAACATCGCGGATCATCGGCTCTATAAGATCGTCAAGTGGTGCAAGAGTCTGCCGTTATTCAAGAATATCTCGATTGATGATCAAATTTGTTTATTAATCAATTCTTGGTGCGAGTTATTACTTTTCTCTTGCTGTTTTCGCAGCATGAGTACTCCTGGTGAAATAAGAGTATCTCTTGGCAAGTCGATTACCTTAGAACAAGCGAGACAGCTTGGTTTAGGGACTTGTATCGAGAGGATGCTCGCTTTTACCAACAATCTGCGAAGGCTGAGAGTAGACCAATACGAATATGTTGCAATGAAGGTGATCGTGCTGTTAACGTCTGATACAAGCGAGTTAAAGGAGCCTGAGAAAGTCAGAGCTTCCCAGGAAAAGGCCCTTCAAGCGCTGCAGCAATACACAATTGCGAGGTATCCAGAAATGCCTGCCAAATTTGGTGAATTATTGTTGAGAATTCCAGATTTGCAAAGAACATGCCAAGCAGGAAAAGAATTGCTCAGTGCAAAACGCGCCGAGGGAGAAGGCAGCTCGTTTAACCTTTTAATGGAATTGTTGAGAGGAGATCACTAA
Protein Sequence: MSEQNGPSEGPGPGPGSDSGWWPTTQTWKSSAAASSSTSSTPTSAAGSASVSVSCSASSSSSTSSSTSTNSSATCCPSSCIGVSCTMSPSRSTETGKNVSVTTINVPPNQEMHDGKGVCKYLGGQNGVTVSVVSTSVLGCGNVPTSGICTNTGPHSIGIGIGGILAANAADIDDPEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGDKIGDGDANGDGGGCCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPGFTIGSFHDGGLPMTHNQQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHSHSQHHQHQVAQGSPLHLPTSSAVAAHHYSSSSVPGSELSPDGHPVAEDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGSMSGEKLTTAGNCSPAPAGSEHHYSVRYHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRISGSGVPGNARNTGNDMLLGGPGSCSASGGTGTTTGIGVGNNGAAVECSSNDSSNVDTNNRRGETASPASSTSTGTPDQHSTNGNTTSNSNSQIANNSNGNSAQHQDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLGTCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01267641;
90% Identity: iTF_00885153;
80% Identity: iTF_01229094;