Trug043256.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- Hr39
- Assembly
- GCA_035220575.1
- Location
- JASTWL010002076.1:1152865-1157061[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.2 3.6e+04 -4.9 8.2 128 164 34 71 20 95 0.60 2 5 1 1.6e+04 -3.7 6.9 81 163 306 396 229 415 0.61 3 5 3 4.8e+04 -7.9 9.8 82 159 428 498 404 541 0.38 4 5 5.6e-08 0.0009 20.2 0.0 1 21 608 628 608 641 0.93 5 5 1.1e-70 1.8e-66 226.7 0.2 201 408 787 1001 640 1001 0.85
Sequence Information
- Coding Sequence
- ATGTCAGAGCAAAACGGGCCCAGCGAGGGCCCAGGGCCAGGGCCCGGCTCGGATTCGGGCTGGTGGCCAAACACGCAGTCTTGGAAATCGTCGGCGGCCGCCTCGTCGTCGACCTCGTCGACTCCCACTTCGGCGGCAGGTTCCGCATCCGTTTCTGTCTCCTGCTCCGCGTCCAGCTCATCCTCGACGAGCTCTTCCACCTCGGCCAACTCGTCCGCGACTTGTTGCCCCTCGTCCTGCATCGGCGTGTCCTGCACGATGAGCCCAAGCCGCTCCACGGAAACGGGGAAAAACGTGTCCGTCACCACTATTAACGTACCGCCCAATCAAGAAATGCACGATGGTAAAGGAGTATGTAAATATCTCGGGGGGCAGAATGGCGTGACGGTGTCGGTGGTATCGACCTCGGTACTGGGATGCGGAAACGCGAACGCCATCCCGACAAGCGGAATCTGCACGAATACGGGGCCGCATAGTATCGGTATCGGAATCGGCGGCATCCTCGCCGCGAACGCGGCCGACATCGATGATCCCGAGGACAGCGACGGCGAGATCAGCAAGATCGACTTTAGAGGCGTCAATCTACGTTCGAAGAAGAAACGCGACGTATCGGGTAATCAGAATGGCGACAAAATCGGTGACGGAGATGCAAACGGCGACGGCGGGGGATGTTGCGATGACAATTCGCAACAGCAGCCAGAGAGGCCTATGTCATGGGAGGGTGAACTATCGGACCAAGAAATGTCTTCCAATACAATTACTAATCAGGATCACAATGAGGAAACGTCTATGGAGGGGGTTCAAGTATGCAGCACGAGCCCTGGGCCCATGGAACAGAAATTTCCTATCAAGTCGGAACCGGATTTTCGATCCAGCCCAGGTTTCACAATAGGATCCTTTCACGATGGTGGACTGCCCATGACACACAATCAACAActgcagcaacagcaacagcaacaacgcGGTATCGAAAACCTCGAACAGACGCAACAGAGTGACCTACCGCTTCTCGTAGGCAAGCTTCTCGGTGGATACAACAACTCGACGCCTAATCACAGTCCTGTTCTCAATCCGCGACATCATCTAACTAAACACAGTCATACTAGATCGCAGGTGCCGTCACCAGATTCCGCCATTCATTCCGCGTATAGTGTCTTCAGTTCACCAACACAGAGCCCCCACGCGGCACGGCATTCCGCTCTAGGAGCGGGCAGTCCGATACCCTCCTCGTCGCTGTCCCTCTCTCGACACAGCTTCAACAATTCGACCTCCTCGTTATCCTTATCGCTGTCGCATTCGCTTTCGAGGAACAATTCCGACGCTTCCAGTAGCTGCTACAGCTACGGCTCGCTTAGCCCGCCTACGCATTCACCCGTCCAGCAGTCGAGACATCCGCACTCGCACTCGCAACATCATCAGCATCAAGTTGCGCAAGGTAGTCCGCTGCATCTACCAGCCTCGTCCGCAGTCGCCGCACATCATTACTCGTCCTCTTCCGTACCAGGCTCGGAACTATCGCCGGACGGCCATGCCGTCGCGGAGGATCAGGAAGACTGTAGGATACCCTCAGCGCCGTCGGGTATCTCCACAAGGCAACAACTGATAAACAGCCCCTGCCCGATTTGCGGCGACAAGATAAGCGGCTTCCATTACGGCATCTTCTCGTGTGAATCGTGCAAGGGATTCTTCAAGCGCACCGTCCAGAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGTCCGGTCACCGTGGCTACGAGGAAGAAGTGCCCGGCCTGCCGCTTCGACAAGTGCCTCAACATGGGTATGAAACTCGAGGCGATCAGGGAGGATCGTACCAGAGGCGGTAGAAGCACTTATCAATGTACCTACACTCTACCGGCAAATCTCGTTGGTAGTCCTGCCGGCGGTATGACCAGCGAAAAACTGACGACGGCGGGCAATTGCAGCCCGGCACCGGCCGGTAGTGAGCACCATTATTCCGTTAGATACCATTCAAATCATTCTCACAAGATACAAGTAGTACCTCAACTTTTGCAAGACATCATGGATGTGGAACATCTTTGGCATTATAACGACAACGATCGGGTAAGCGGCAGTGGAGGGGTACTTGGAAGTGCAAGGAATAATATTGGTGACAGTATGCTGTTCGGTGGATCCGGAAGTGGTCTGACGCCCAGCGGTATTGGAACCGCGACCGGTATTGGTGCCGGAAACAACGGAGGTGCGGTGGAATGTTTGTCGAATGACTCTAGTAACGTCGATACTAATAGTAAGAAAGGAGAGACGGCGAGCCCTGCCAGTTCGACCTCAACGGGGGCGTCTGATCAACATTCCACAAACGGCAATACCACCAACAATAGTAATTCTCAAATCGCCAGTAATTCCAATGGCAATTCAGCGCAGCATCCGGACTTTCTATCTAATCTGTGCAACATCGCGGATCATCGGCTTTATAAGATCGTCAAGTGGTGCAAGAGtctgccattatttaaaaatatctcgatCGACGATCAAATCTGTTTGTTGATCAACTCTTGGTGCGAGCTACTACTTTTCTCCTGCTGTTTTCGCAGCATGAGCACTCCCGGTGAGATAAGAGTGTCTCTTGGCAAGTCGATTACTCTAGAACAAGCAAGACAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCGCGTTTACCGACAATCTGCGAAGACTGAGAGTAGACCAATACGAATATGTTGCAATGAAGGTGATCGTGCTGTTAACGTCCGATACAAGCGAATTAAAGGAGCCTGAGAAAGTCAGAGCCTCTCAGGAAAAGGCCCTTCAAGCACTGCAGCAATATACAATCGCGAGGTATCCAGAAATGCCTGCCAAATTCGGTGAATTATTATTGAGAATTCCAGATCTACAAAGAACATGTCAAGCAGGAAAAGAATTGCTCAGTGCAAAACGCGCCGAGGGAGAAGGCAGCTCGTTTAACCTTTTAATGGAATTGTTGAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGSDSGWWPNTQSWKSSAAASSSTSSTPTSAAGSASVSVSCSASSSSSTSSSTSANSSATCCPSSCIGVSCTMSPSRSTETGKNVSVTTINVPPNQEMHDGKGVCKYLGGQNGVTVSVVSTSVLGCGNANAIPTSGICTNTGPHSIGIGIGGILAANAADIDDPEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGDKIGDGDANGDGGGCCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPGFTIGSFHDGGLPMTHNQQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQSRHPHSHSQHHQHQVAQGSPLHLPASSAVAAHHYSSSSVPGSELSPDGHAVAEDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGGMTSEKLTTAGNCSPAPAGSEHHYSVRYHSNHSHKIQVVPQLLQDIMDVEHLWHYNDNDRVSGSGGVLGSARNNIGDSMLFGGSGSGLTPSGIGTATGIGAGNNGGAVECLSNDSSNVDTNSKKGETASPASSTSTGASDQHSTNGNTTNNSNSQIASNSNGNSAQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTDNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267641;
- 90% Identity
- iTF_00885153;
- 80% Identity
- iTF_01408357;