Pmex001861.1
Basic Information
- Insect
- Polyergus mexicanus
- Gene Symbol
- Hr39
- Assembly
- GCA_030449975.1
- Location
- JAUDSZ010000001.1:11783596-11787415[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1 1.5e+04 -3.7 7.7 99 170 42 109 8 112 0.60 2 6 0.44 6.8e+03 -2.6 8.3 53 164 286 398 256 431 0.56 3 6 3 4.6e+04 -8.3 10.4 77 146 441 511 404 541 0.39 4 6 5.9e-08 0.0009 20.1 0.0 1 21 608 628 608 634 0.92 5 6 0.52 8e+03 -2.8 0.0 89 113 667 691 645 698 0.71 6 6 5.5e-70 8.5e-66 224.4 0.0 192 408 791 1002 748 1002 0.92
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCAGGACCAGGACCCGGTTCGGATTCAGGCTGGTGGCCCACCCAGACCTGGAAatcatcgtcgtcatcgtcatcggcGACGACGGCGGCGACCTCATCGTCAGCATCCACTTCAGTGGCAGGTTGCGCGTCTATTTCGGTTTCCTGCGCTACGTCCAGCTCGTCACCGACGAGCTCCTCCACCTCGACCAACACGTCCGCGACCTGTTGCCCCCTGTCTTGCATCGGGGTATCGATGAGCCCGAGCCGTTCCACGGAGACGGGGAAAAACGTGTCCGTCACCACTATTAACGTACCGCCCAATCAAGAGATGCACGATGgTAAAGGAGTGTGTAAATATCTCGGGGGACAGAACGGCGTGACGGTGTCGGTGGTATCGACCTCGGTGCTGGGATGCGGAAATGCCGTCCCGACAAGCGGAATCTGCACGAATACGGGGCCGCATACTATCGGCATCGGAATCGGCGGTATCCTCGCCGCGAACGCGGCCGACATCGATGATCCCGAGGACAGCGACGGCGAGATCAGCAAGATTGACTTTAGAGGCGTCAATCTACGCTCGAAGAAGAAACGCGACGTATCGGGTAACCAGAACGGTGACAAGATCGGCGATGGGGATGCAAATGGCAACGGCGCGGGATGCTGTGACGATAATTCGCAACAGCAGCCCGAGAGACCAATGTCGTGGGAGGGAGAATTATCGGACCAAGAAATGTCTTCCAATACAATTACTAATCAGgACCATAACGAGGAAACGTCCATGGAGGGAGTTCAGGTGTGCGGTGCGAGTCCTGGACCCATGGAACAGAAATTTCCGATTAAGTCAGAACCGGATTTTCGATCCAGCCCGGCTTTCACAATAGGATCCTTTCACGACGCCGGACTACCCATTACTCATAATCAACAACTgcaacagcagcaacagcaacaaCGCGGTATCGAAAATCTCGAGCAGACCCAACAAAGCGACCTACCGCTTCTCGTGGGCAAGCTTCTCGGCGGATATAACAATTCTACGCCTAATCACAGCCCTATTCTCAATCCGCGACATCATCTAACCAAGCACAGTCATACTAGATCGCAGGTGCCGTCACCAGATTCCGCCATTCATTCCGCATACAGCGTCTTCAGCTCACCGACGCAAAGCCCTCATGCAGCACGGCACTCCGCCTTAGCGGGCAGTCCGATACCGTCCTCATCGTTATCCCTCTCTCGGCACAGCTTCAACAATTCGACCTCCTCACTATCCCTGTCGCTGTCGCATTCGCTTTCGAGGAACAATTCGGACGCTTCCAGTAGCTGTTACAGTTACGGTTCACTTAGCCCGCCTACGCATTCACCCGTCCAACAATCGAGACATCCGCATTCGCACTCGCAACATCACCAACATCAAGTGGCGCAAGGTAGTCCGTTGCATCTTCCGACAGCCTCGTCTGCTGTCGCCGCGCATCATTATTCATCCTCTTCCGTGCCAGGGTCGGAATTGTCGCCGGACGGCCATCCGGTCGCGGAGGATCAGGAAGACTGTAGAATACCGTCGGCGCCGTCGGGTATTTCCACCAGACAGCAATTGATAAACAGTCCCTGTCCGATTTGCGGTGACAAGATAAGCGGATTTCATTACGGTATCTTCTCGTGCGAGTCGTGCAAGGGATTCTTCAAGCGCACCGTCCAGAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGTCCGGTCACCGTGGCCACAAGGAAAAAATGTCCGGCCTGTCGCTTCGACAAGTGCCTCAACATGGGTATGAAGCTTGAGGCGATCAGGGAGGATCGTACCAGAGGCGGTAGAAGCACGTATCAGTGCACCTATACCCTACCGGCGAATCTTGTCGGCAGTCCCGCCGGCGGTATGGGCGGCAGCGAAAAACTGACGGCGGCGGGCAATTGCAGTCCGGCACCGGTTGGAAGCGAGCATCATTATTCAGTCAGATATCATTCGAATCATTCTCACAAGATGCAAGTGCCGCAACTCTTGCAAGACATTATGGACGTGGAGCATCTCTGGCATTATAACGACAATGATCGAGTAAGCGGGGGAATATCCGGGAATGCGAGAAGCATGTCTGTTAGCGGTGACAGCAATATGCTGCTCGGTGGATTCGGAGGTGGCGCATCGGCACCCGGTGGAACTGCGACCGTTATCGGCGCCGGAAATAACGGAGGCGCGGTGGAATGTTCGTCGAACGATTCGAGCAACGTCGATACTAACAACAGAAGAGGAGAGTCGGGTAGCCCCACCGGCTCGACTTCCACAGGGGCGCCCGATCAACATTCCACGAACGGCAATACCGTAAATAATAGCAATTCTCAAATCGCCAGTAATTCCAATAATGGCAATCCGACGCAACATCCGGACTTTCTCTCTAATCTGTGCAACATCGCAGACCATCGACTTTATAAGATTGTCAAATGGTGCAAGAGTCTGCCGTTATTCAAGAATATCTCGATCGATGATCAAATCTGTTTGTTGATCAACTCTTGGTGCGAGCTACTACTCTTCTCTTGCTGTTTTCGCAGCATGAACAGTCCCGGTGAGATCAGAGTGTCTCTCGGCAAGTCGATCACTCTAGAACAAGCTAGAGAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCGCTTTTACCAACAATCTGCGAAGACTGAGAGTAGACCAATACGAATATGTTGCTATGAAGgtGATCGTGCTATTAACCTCCGACATAAGCGAATTAAAGGAACCTGAAAAGGTTAGAGCTTCTCAAGAAAAAGCTCTTCACGCATTGCAGCAATATACAATCGCGAAATATCCAGAAATGCCTGCCAAATTTGGTGAACTATTATTGAGAATACCAGATCTACAAAGAACGTGTCAAGCAGGAAAAGAATTGCTCAGTGCAAAGCGTGCCGAGGGAGAAGGCAGCTCCtttaatcttttaatggaATTGTTGAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGSDSGWWPTQTWKSSSSSSSATTAATSSSASTSVAGCASISVSCATSSSSPTSSSTSTNTSATCCPLSCIGVSMSPSRSTETGKNVSVTTINVPPNQEMHDGKGVCKYLGGQNGVTVSVVSTSVLGCGNAVPTSGICTNTGPHTIGIGIGGILAANAADIDDPEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGDKIGDGDANGNGAGCCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCGASPGPMEQKFPIKSEPDFRSSPAFTIGSFHDAGLPITHNQQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPILNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQSRHPHSHSQHHQHQVAQGSPLHLPTASSAVAAHHYSSSSVPGSELSPDGHPVAEDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGGMGGSEKLTAAGNCSPAPVGSEHHYSVRYHSNHSHKMQVPQLLQDIMDVEHLWHYNDNDRVSGGISGNARSMSVSGDSNMLLGGFGGGASAPGGTATVIGAGNNGGAVECSSNDSSNVDTNNRRGESGSPTGSTSTGAPDQHSTNGNTVNNSNSQIASNSNNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMNSPGEIRVSLGKSITLEQARELGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDISELKEPEKVRASQEKALHALQQYTIAKYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267641;
- 90% Identity
- iTF_00885153;
- 80% Identity
- iTF_01245294;