Tsim016085.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetramorium simillimum
Gene Symbol
Hr39
Assembly
GCA_011636635.1
Location
VBVQ01003994.1:4561-8474[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 1.8 1.6e+04 -4.6 6.5 131 164 38 66 21 101 0.53
2 4 3 2.7e+04 -6.5 10.4 84 163 309 396 229 439 0.59
3 4 3 2.7e+04 -7.7 9.7 76 147 437 512 403 541 0.41
4 4 7.2e-75 6.4e-71 240.5 1.0 1 408 608 995 608 995 0.77

Sequence Information

Coding Sequence
ATGTCAGAGCAAAACGGGCCCAGCGAGGGCCCAGGGCCAGGGCCCGGCACGGATTCGGGCTGGTGGCCAAACACGCAGACTTGGAAATCGTCGGCGGCCGCCTCGTCGTCGACCTCGTCGAGCCCCGCCTCGGCGGCGGGTTCAGCATCCGTCTCTGTCTCTTGCTCCGCGTCCAGCTCATCCTCGACGAACTCTTCCACCTCGGCCAACTCATCCGCGACCTGTTGTCCCTCATCCTGCATCGGCGTCTCTTGCACAATGAGTCCGAGCCGTTCCACGGAAACGGGGAAAAACGTGTCCGTCACCACTATTAACGTACCGCCCAATCAAGAAATACACGATGGTAAAGGAGTATGTAAATATCTTGGGGGACAGAATGGTGTGACGGTATCGGTCGTGTCGACCTCGGTACTGGGATGCGGAAACGCAAATGCCGTCCCGGCAAGCGGAATTTGCACGAATACGGGGCCGCATAGTATCGGCATCGGAATCGGCGGCATCCTCGCCGCGAACGTGGCCGACATCGACGATCCCGAGGACAGCGACGGCGAGATCAGCAAGATTGACTTTAGAGGTGTCAATCTACGTTCGAAGAAGAAACGCGACGTATCGGGTAATCAGAATGGCGACAAGATCGGTGATGGAGATACAAACGGCGACGGTGGGGGATGCTGCGATGACAATTCGCAACAGCAGCCAGAGAGGCCTATGTCATGGGAGGGTGAACTATCGGACCAAGAAATGTCTTCCAATACAATTACTAATCAGGACCACAATGAGGAAACGTCTATGGAGGGGGTTCAAGTGTGCAGCACGAGCCCGGGACCCATGGAACAGAAGTTTCCTATTAAATCGGAGCCGGATTTTCGATCTAGCCCAGGTTTCACAATAGGATCCTTTCACGATGGTGGACTGCCCATGACACACAATCAACAActgcagcaacagcaacagcagcaacgcGGTATTGAAAACCTCGAGCAGACTCAACAGAGCGATCTACCGCTTCTCGTGGGCAAGCTTCTCGGCGGATACAACAACTCGACGCCTAATCACAGTCCTGTTCTCAATCCGCGACATCATCTAACTAAACACAGTCATACTAGATCACAGGTGCCGTCACCAGATTCCGCCATTCATTCTGCGTATAGCGTCTTCAGTTCACCGACACAGAGCCCTCACGCGGCACGACATTCTGCCCTAGGAGCGGGAAGTCCGATACCCTCCTCGTCGCTGTCCCTCTCTCGACACAGCTTCAACAATTCGACTTCCTCGTTATCCCTATCGTTATCGCATTCGCTTTCGAGGAACAATTCCGACGCTTCCAGTAGCTGCTACAGCTACGGCTCGCTTAGCCCGCCTACACATTCACCCGTCCAGCAGTCGAGACATCCGCATTCGCACTCGCAACATCATCAGCATCAAGTGGCGCAAGGTAGTCCGCTGCATCTACCAGCCTCATCCGCAGTCGCCGCACATCATTATTCCTCCTCTTCCGTACCAGGGGCGGAATTGTCGCCGGACGGCCATCCTGTCGCGGAGGATCAGGAAGACTGCAGGATACCCTCAGCGCCGTCGGGTATCTCCACCAGGCAACAATTGATAAACAGTCCCTGCCCGATTTGCGGCGACAAGATAAGCGGCTTCCATTACGGCATCTTCTCGTGTGAATCGTGCAAGGGATTCTTCAAGCGCACCGTCCAGAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGCCCGGTCACCGTGGCCACGAGAAAGAAGTGCCCGGCCTGCCGCTTCGACAAGTGCCTCAACATGGGTATGAAACTCGAGGCGATCAGGGAGGATCGTACCAGAGGCGGTAGAAGCACCTATCAATGTACCTACACTCTACCGGCAAATCTCGTTGGTAGTCCTGCCGGTGGTATGACCGGTGAAAAACTGACGACGGCGGGCAATTGCAGCCCGGCACCGGCCGGTAGCGAGCACCATTATTCCGTTAGATATCATTCGAATCATTCTCACAAGATGCAAGTGGTACCTCAACTGTTGCAAGATATCATGGATGTGGAACATCTTTGGCATTACAACGATAACGATCGGATGAGCGGTGGTGGTGGGGTACTCGGAAGGAACAACAGTGGTGAGAGTATGCTACTCGGTGGATCCGGAAGTGGTCTGACGCCCAGCGGTACTGTAACCGCGACCGGAAACAACGGAGGTGCAGTGGAATGTTCGTCTAATGACTCTAGCAACGTCGATACTAATAGTAGAAGAGGAGAGACGGCGAGCCCTGCCGGCTCGACCTCAACGGGGGCGTCTGATCAACATTCCACAAACGGCAATATCACCAACAATAGTAATTCTCAAATCACCAATAATTCCAATGGCAATTCGGCGCAGCATCCGGACTTTCTATCTAATCTGTGCAACATTGCGGATCATCGGCTTTACAAGATCGTCAAGTGGTGCAAGAGTCTgccgttatttaaaaatatctcgatcGACGATCAAATCTGTTTGTTGATCAACTCTTGGTGCGAGCTATTACTTTTCTCTTGCTGTTTTCGCAGCATGAGTACTCCCGGTGAGATAAGAGTGTCTCTTGGCAAGTCGATTACTCTAGAACAAGCAAGGCAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCGCTTTTACCAACAATCTGCGAAGACTGAGAGTAGACCAATACGAATACGTTGCAATGAAGGTGATCGTGCTGCTAACGTCCGATACAAGCGAATTAAAGGAGCCTGAGAAAGTCAGAGCTTCTCAGGAAAAAGCCCTTCAAGCACTGCAGCAATATACAATCGCGAGGTATCCAGAAATGCCTGCCAAATTCGGTGAACTATTGTTGAGAATTCCAGATCTGCAAAGAACATGTCAAGCAGGAAAAGAATTGCTCAGTGCAAAACGCGCCGAGGGAGAAGGCAGCTCGTTTAACCTTTTAATGGAATTGTTGAGAGGAGATCACTGA
Protein Sequence
MSEQNGPSEGPGPGPGTDSGWWPNTQTWKSSAAASSSTSSSPASAAGSASVSVSCSASSSSSTNSSTSANSSATCCPSSCIGVSCTMSPSRSTETGKNVSVTTINVPPNQEIHDGKGVCKYLGGQNGVTVSVVSTSVLGCGNANAVPASGICTNTGPHSIGIGIGGILAANVADIDDPEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGDKIGDGDTNGDGGGCCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPGFTIGSFHDGGLPMTHNQQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQSRHPHSHSQHHQHQVAQGSPLHLPASSAVAAHHYSSSSVPGAELSPDGHPVAEDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGGMTGEKLTTAGNCSPAPAGSEHHYSVRYHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMSGGGGVLGRNNSGESMLLGGSGSGLTPSGTVTATGNNGGAVECSSNDSSNVDTNSRRGETASPAGSTSTGASDQHSTNGNITNNSNSQITNNSNGNSAQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267641;
90% Identity
iTF_00885153;
80% Identity
iTF_01423740;