Tzet006658.1
Basic Information
- Insect
- Trachymyrmex zeteki
- Gene Symbol
- Hr39
- Assembly
- GCA_001594055.1
- Location
- NW:1861476-1887259[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.8 7.4e+03 -4.8 8.6 130 161 38 69 18 95 0.56 2 5 0.61 1.6e+03 -2.6 5.4 81 163 301 391 224 402 0.60 3 5 4 1.1e+04 -10.3 13.5 64 160 405 504 378 528 0.48 4 5 4.5e-08 0.00012 20.9 0.0 1 22 603 624 603 642 0.90 5 5 2e-70 5.3e-67 226.3 0.0 188 408 780 994 726 994 0.89
Sequence Information
- Coding Sequence
- ATGTCAGAGCAAAACGGGCCCAGCGAGGGCCCAGGGCCAGGGCCCGGTTCGGATTCGAGCTGGTGGCCAAGCACGCAGACTTGGAAGTCGTCAGCAGCCGCCTCGTCGTCGACTTCGTCGACTCCCACTTCAACGTCCGTCTCTGTCTCCTGCTCTGCGTCCAGCTCGTCGACGAGCTCCTCCACCTCGATCAACTCGTCCACGACCTGTTGTCCCTCGTCGTGTATCGGCGTGTCCTGCACGATGAGCCCAAGCCGTTCCACGGAGACGGGGAAAAATGTATCCGTCACTACTATTAACGTACCGCCCAATCAAGAAATGCATGATGCTAAAGGAGTATGTAAATATCTCGGGGGACAAAACGGTGTGACGGTATCGGTGGTATCGACCTCGGTACTGGGATGTGGAAACGCGAATGCCGTCCCGACAAGCGGAATCTGCACGAATACGGGGCCGCATAGTATCGGTATCGGAATTGGTGGCATCCTCGCTGCGAACGCAGCCGACATCGATGATCCTGAGGATAGCGACGGTGAGATCAGCAAGATTGACTTTCGAGGTGTCAATCTACGTTCGAAGAAGAAACGCGACGTATCGGGTAATCAGAATGGCGAGAAGATCGGTGACGGAGAAGCAAACGGCGACGGCGGGGGATGCTGCGATGATAATTCGCAACAGCAACCTGAGAGGCCCATGTCATGGGAGGGTGAACTATCGGACCAAGAAATGTCTTCCAATACAATTACTAATCAGGACCACAATGAGGAAACGTCTATGGAGGGGGTTCAAGTATGCAGTACGAGTCCTGGGCCTATGGAACAGAAGTTTCCTATTAAGTCAGAGCCGGATTTTCGATCTAGTCCAGGTTTCTCAATAGGATCCTTTCACGATGGTGGACTTCCCATGACACACAATCAACAATtgcaacaacagcaacagcaacaacgCGGTATCGAAAACCTCGAACAAACTCAACAGAGCGACTTACCGCTTCTTGTAGGCAAGCTTCTCGGTGGATACAACAATTCAACGCCTAATCATAGTCCCGTTCTCAATCCGCGACATCATCTAACTAAACACAGTCATACTAGATCGCAGGTGCCGTCGCCAGATTCCGCCATTCATTCTGCGTATAGCGTCTTCAGTTCACCAACACAGAGCCCTCATGCAGCACGACACTCCGCCCTAGGAGCGGGTAGTCCAATACCCTCATCGTCGTTGTCCCTCTCTCGACACAGCTTCAACAACTCGACTTCTTCGTTATCTCTATCGTTGTCGCATTCGCTTTCGAGGAACAATTCCGACGCTTCCAGTAGCTGCTACAGTTACGGTTCGCTTAGCCCGCCTACGCATTCACCCGTCCAGCAACCGAGACATCCGCATTCACACTCGCAACATCATCAGCATCAAGTGCCGCAAGGTAGTCCGCTGCATCTACCAGCCTCGTCCGCAGTTGCCGCACATCATTACTCGTCCTCTTCCGTACCAGGTTCGGAATTGTCGTCGGACGGCCATCCCGTTGCGGAAGATCAGGAAGACTGTAGGTTACCCTCGGCGCCATCGGGTATCTCCACCAGGCAACAACTAATTAACAGTCCCTGCCCGATTTGCGGTGACAAGATAAGCGGCTTCCATTATGGCATCTTTTCGTGTGAATCGTGCAAGGGATTTTTCAAGCGCACCGTCCAGAATCGTAAGAACTATGTGTGCCTTAGAGGCGCAGGTTGTCCGGTCACCGTGGCCACGAGGAAAAAGTGTCCGGCCTGCCGCTTCGACAAGTGCCTCAATATGGGTATGAAGCTCGAGGCGATCAGGGAGGATCGTACCAGAGGCGGTAGAAGCACTTATCAGTGTACCTATACTCTGCCAAATCTCGTTGGTAGTCCTGCTGGTATGACCAGTGAAAAACTGACGACGGCAGGCAATTGCAGCCCGGCACCGGCTGGTAGCGAGCACCATTATTCTGTTAGATATCATTCAAATCATTCTTACAAGATGCAAGTAGTACCTCAACTTTTGCAAGACATTATGGATGTAGAACATCTTTGGCATTACAACGATAATGATCGGATAAGCGGTAGTGGAGGAATACTTGGAAGTGTAAGGAATACCGGTGGTGACAGTATGCTACTCGGTGGACTCGGAAGTGGTCCAGCGCTCAGCGGTACTGGAACTGCGACCAGTATTGGCGCCGGAAACAACGGAGGTACAGTGGAATGTTCGTCGAATGACTCTAACAATGTTGATACTAATAGCAGAAGGGGAGAAACAGCGAGCCCCACTGATTCGACCTTAACGGGGGCGTCCGATCAACATTCCACAAATGGCAATACcactaataatagtaattctCAAATTGCCAGTAATTCCAACGGTAATTCAGCGCAACATCCAGACTTTCTATCTAATCTGTGCAACATTGCGGATCATCGGCTCTATAAGATCGTCAAGTGGTGCAAAAGTTtgccattatttaaaaatatttcaatcgaTGATCAAATCTGTTTGTTGATTAACTCTTGGTGTGAGCTACTGCTTTTCTCCTGCTGTTTTCGCAGTATGAGCACTCCCGGTGAGATAAGAGTGTCTCTCGGCAAGTCGATTACTTTAGAACAGGCAAGACAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCACTTTCACCAATAATCTGCGAAGACTGAGAGTAGACCAATACGAATATGTTGCAATGAAGGTGATCGTGTTGTTAACGTCCGATACAAGCGAATTAAAAGAGCCTGAAAAGGTCAGAGCTTCTCAAGAAAAGGCACTTCAAGCACTGCAGCAATACACAATCGCGAGGTACCCAGAAATGCCTGCCAAATTCGGTGAACTATTGTTGAGAATTCCAGATCTGCAAAGAACATGTCAAGCAGGAAAAGAATTGCTGAGTGCAAAACGTGCTGAGGGAGAAGGCAGCTcgtttaatcttttaatggAATTGTTGAGAGGAGATCATTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGSDSSWWPSTQTWKSSAAASSSTSSTPTSTSVSVSCSASSSSTSSSTSINSSTTCCPSSCIGVSCTMSPSRSTETGKNVSVTTINVPPNQEMHDAKGVCKYLGGQNGVTVSVVSTSVLGCGNANAVPTSGICTNTGPHSIGIGIGGILAANAADIDDPEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGEKIGDGEANGDGGGCCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPGFSIGSFHDGGLPMTHNQQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHSHSQHHQHQVPQGSPLHLPASSAVAAHHYSSSSVPGSELSSDGHPVAEDQEDCRLPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPNLVGSPAGMTSEKLTTAGNCSPAPAGSEHHYSVRYHSNHSYKMQVVPQLLQDIMDVEHLWHYNDNDRISGSGGILGSVRNTGGDSMLLGGLGSGPALSGTGTATSIGAGNNGGTVECSSNDSNNVDTNSRRGETASPTDSTLTGASDQHSTNGNTTNNSNSQIASNSNGNSAQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLTFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267641;
- 90% Identity
- iTF_00885153;
- 80% Identity
- iTF_01477683; iTF_01477598;