Agra028965.1
Basic Information
- Insect
- Anoplolepis gracilipes
- Gene Symbol
- Hr39
- Assembly
- GCA_031304115.1
- Location
- JAPWJP010002103.1:2405082-2408996[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 2.2 3.2e+04 -4.8 8.5 121 160 59 98 19 111 0.49 2 6 0.22 3.2e+03 -1.5 6.8 51 163 283 396 274 417 0.66 3 6 3 4.5e+04 -7.7 9.1 78 155 424 505 403 538 0.40 4 6 6.2e-08 0.00093 20.0 0.0 1 21 609 629 609 633 0.92 5 6 0.36 5.4e+03 -2.3 0.0 87 113 666 692 635 700 0.71 6 6 3.7e-70 5.6e-66 225.0 0.0 197 408 797 1003 748 1003 0.93
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCCGGACCAGGGCCCGGTTCGGATTCAGGCTGGTGGGCGTCCACACAGACCTGGaaatcgtcgtcatcgtcgtcggcgacggcggcggcgaccTCATCGTCATCTTCCAATTCAGCGGGTTCCGCGTCCGTCTCGGTTTCCTGCGCCACGTCCAGCTCGTCTCCGACGAGCTCCTCCACCTCGACCAACACGTCCGCGACCTGTTGCCCCCTGTCTTGCATCGGCGTATCGATGAGTCCGAGCCGTTCCACGGAGACGGGGAAAAACGTGTCCGTTACTACTATTAACGTACCGCCCAATCAAGAGATGCACGATGgtaaaGGAGTGTGTAAATATCTCGGAGGACAGAATGGCGTGACCGTGTCGGTGGTATCGACCTCGATGCTGGGATGCGGAAACGCCGTCCCGACGAGTGGAATCTGCACGAATACGGGACCGCATAGTATCGGCATCGGAATCGGCGGTATCCTCGCCGCGAACGCGGCCGACATCGACGATCCCGAAGACAGCGATGGCGAGATCAGCAAAATTGACTTCAGAGGCGTCAATCTGCGCTCGAAGAAGAAACGCGAGGTATCGGGTAACCAGAATGGTGATAAAATCGGCGATGGAGATGCAAATGGCGATGGCGCAGGATGCTGCGACGATAATTCGCAACAGCAACCCGAGAGACCAATGTCGTGGGAGGGAGAACTATCGGATCAAGAAATGTCTTCCAATACAATTACTAATCAGGACCATAATGAGGAAACGTCCATGGAGGGAGTTCAGGTGTGCAGTACGAGTCCTGGACCCATGGAACAGAAATTTCCAATCAAGTCAGAGCCAGATTTTCGATCCAGTCCAGCTTTCACAATAGGATCCTTTCACGACGCCGGACTACCCATGACACATAATCAACAActgcaacagcagcagcagcaacaacaacgtGGTATCGAAAATCTCGAGCAGACTCAACAAAGCGACCTACCGCTTCTCGTGGGCAAGCTTCTCGGCGGATACAACAATTCTACGCCTAATCATAGCCCTATCCTCAATCCGCGACATCATCTAACCAAGCATAGTCATACTAGATCACAGGTGCCGTCACCAGATTCTGCCATTCATTCCGCATACAGCGTCTTTAGTTCACCTACGCAAAGTCCTCATGCGGCACGACATTCCGCCCTAGGTGCGGGCAGTCCGATACCGTCCTCGTCGTTATCTCTCTCTCGGCATAGCTTCAATAACTCGACCTCCTCGTTATCCCTATCGCTGTCGCATTCGCTTTCGAGGAACAATTCAGACGCTTCTAGTAGCTGTTACAGCTACGGCTCGCTTAGTCCACCTACGCATTCACCCGTCCAGCAGCCAAGACATCCGCATTCGCACTCGCAACATCACCAGCATCAAGTGGCGCAAGGTAGTCCGTTGCATCTTCCGGCAGCCTCGTCCGCTGTCGCTGCGCATCATTACTCATCTTCTTCCGTGCCAGGCTCGGAACTGTCGTCGGACGGCCATCCGGTCGCGGAAGATCAGGAAGACTGTAGAATACCGTCGGCGCCGTCGGGTATTTCCACTAGACAGCAACTAATAAATAGTCCTTGTCCGATTTGCGGTGACAAGATAAGCGGATTTCATTACGGTATCTTCTCGTGCGAGTCATGCAAGGGATTCTTCAAGCGCACCGTCCAGAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGTCCGGTCACCGTAGCAACGAGGAAGAAATGTCCGGCCTGCCGCTTCGAAAAGTGCCTCAACATGGGTATGAAACTTGAGGCGATCAGAGAAGATCGTACGAGAGGCGGTAGAAGCACCTATCAATGCACCTATACTCTACCGGCGAATCTTGTCGGTAGTCCCGCCGGTAGTATGGCCGGCAACGAAAAACTGACGGTGGCGGGCAATTGCAGCCCAGCACCGACCGGAAGCGAGCACCATTACTCAGTCAGATATCACTCGAATCATTCTCACAAGATGCAAGTGCCGCAACTCTTGCAAGACATTATGGACGTGGAGCATCTCTGGCATTATAACGACAATGATCGGATAAGTGGGGGAATATCTGGGAATGCGAGGAACATCTCTGTAAGCGGTGACAGCAATATGCTGCTCGGTGGATTCGGAAGTGGCCCATTGGCACCTGGCGGAACGGCGACTGTTATTGGCGCCGGAAATAACGGAGGCGCGGTGGAATGTTCGTCGAGCGATTCGAGTAACGTCGATACTAATAACAGAAGAGGAGAGTCGGGTAGCCCCGCCGGCTCGACTTCTACAGGGGCGCCCGATCAACATTCCACGAACGGCAATACCGTGAATAATGGCAATTCTCAAATCGCCAGTAATTCCAATAATGGCAATCCGACGCAACATCCAGACTTTTTGTCTAACCTGTGCAACATCGCAGATCATCGACTCTATAAGATCGTCAAGTGGTGCAAGAGTCTGCCGTTATTCAAGAATATCTCGATCGACGATCAAATCTGTTTGTTGATCAACTCTTGGTGCGAATTACTACTCTTCTCCTGCTGTTTTCGCAGCATGAACAGTCCTGGTGAAATCAGAGTGTCTCTCGGCAAGTCGATCACTCTAGAACAAGCTAAAGAACTTGGTTTAGCGACTTGCATCGAGAGGATGCTCGCTTTTACCAATAATCTGCGAAGGCTGAGAGTAGATCAATATGAATATGTTGCAATGAAGgtGATCGTGCTATTAACGTCCGACATAAGCGAATTAAAGGAACCTGAAAAGGTCAGAGCTTCTCAGGAAAAAGCTCTTCACGCGTTACAGCAATACACAATTGCGAAATATCCAGAAATGCCTGCCAAATTCGGTGAACTATTATTGAGAATTCCAGATCTACAAAGAACGTGTCAAGCAGGAAAAGAATTGCTCAGTGCAAAACGCGCCGAGGGAGAAGGCAgctcttttaatcttttaatggAATTGTTGAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGSDSGWWASTQTWKSSSSSSATAAATSSSSSNSAGSASVSVSCATSSSSPTSSSTSTNTSATCCPLSCIGVSMSPSRSTETGKNVSVTTINVPPNQEMHDGKGVCKYLGGQNGVTVSVVSTSMLGCGNAVPTSGICTNTGPHSIGIGIGGILAANAADIDDPEDSDGEISKIDFRGVNLRSKKKREVSGNQNGDKIGDGDANGDGAGCCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPAFTIGSFHDAGLPMTHNQQLQQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPILNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHSHSQHHQHQVAQGSPLHLPAASSAVAAHHYSSSSVPGSELSSDGHPVAEDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFEKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGSMAGNEKLTVAGNCSPAPTGSEHHYSVRYHSNHSHKMQVPQLLQDIMDVEHLWHYNDNDRISGGISGNARNISVSGDSNMLLGGFGSGPLAPGGTATVIGAGNNGGAVECSSSDSSNVDTNNRRGESGSPAGSTSTGAPDQHSTNGNTVNNGNSQIASNSNNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMNSPGEIRVSLGKSITLEQAKELGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDISELKEPEKVRASQEKALHALQQYTIAKYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267641;
- 90% Identity
- iTF_00885153;
- 80% Identity
- iTF_00109897;