Fexs003846.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Formica exsecta
Gene Symbol
Hr39
Assembly
GCA_003651465.1
Location
NW:1860392-1881706[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 1.2 3.3e+03 -3.5 7.6 98 170 41 109 8 112 0.58
2 5 0.28 7.7e+02 -1.5 6.2 52 164 285 397 274 413 0.61
3 5 4 1.1e+04 -8.0 10.5 78 144 423 509 399 541 0.39
4 5 8e-08 0.00022 20.1 0.0 1 21 608 628 608 633 0.92
5 5 3e-68 8.5e-65 219.1 0.0 194 408 793 1001 752 1001 0.92

Sequence Information

Coding Sequence
ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCAGGACCAGGGCCCGGTTCGGATTCAGGCTGGTGGCCTACCCAGACCTGGAAatcatcgtcgtcatcgtcatcggcgacggcggcggcgaccTCATCGTCAACTTCCACTTCAGTGGCAGGTTGCGCGTCCATTTCGGTTTCCTGCGCTACGTCCAGCTCGTCACCGACGAGCTCCTCCACCTCGACCAACACGTCCGCGACCTGTTGCCCCCTGTCTTGTATCGGGGTATCGATGAGCCCGAGTCGTTCCACGGAGACGGGGAAAAACGTGTCCGTTACCACTATTAACGTACCGCCCAATCAAGAGATGCACGatggTAAAGGAGTGTGTAAATATCTCGGGGGACAGAACGGCGTGACGGTGTCGGTGGTATCGACCTCGGTGCTGGGATGCGGAAACGCCGTCCCGACAAGCGGAATCTGCACGAATACGGGGCCGCATAGTATCGGCATCGGAATTGGCGGTATCCTCGCCGCGAACGCGGCCGACATCGACGATCCCGAGGATAGCGACGGCGAGATCAGCAAGATTGACTTTAGAGGCGTCAATCTACGCTCGAAAAAGAAACGCGACGTATCGGGTAACCAGAATGGTGACAAGATCGGCGATGGGGATGCAAATGGCGACGGCGCGGGATGCTGTGACGATAATTCGCAACGGCAGCCCGAGAGACCAATGTCTTGGGAAGGAGAATTATCGGACCAAGAAATGTCTTCCAATACAATTACTAATCAGGACCATAACGAAGAAACGTCCATGGAGGGAGTTCAGGTGTGCAGTACGAGTCCTGGACCCATGGAACAGAAATTTCCGATTAAGTCAGAACCGGATTTTCGATCCAGTCCGGCTTTCACAATAGGATCCTTTCACGACGCCGGACTACCCATGACTCATAATCAACAActgcaacagcagcaacagcaacaacgCGGTATCGAAAATCTCGAGCAGACTCAACAAAGCGACCTACCGCTTCTCGTGGGCAAGCTTCTCGGTGGATATAACAATTCCACGCCTAATCATAGCCCTATTCTCAATCCGCGACATCATCTAACCAAGCACAGTCATACTAGATCGCAGGTGCCGTCACCAGATTCCGCCATTCATTCCGCATATAGCGTCTTCAGTTCACCGACGCAAAGCCCTCATGCAGCACGGCACTCCGCCTTAGCGGGCAGTCCGATACCGTCCTCATCGTTATCCCTCTCTCGGCACAGCTTCAACAATTCGACCTCCTCACTATCCCTGTCGCTGTCGCATTCGCTTTCGAGGAACAACTCGGACGCTTCCAGTAGCTGTTACAGTTACGGCTCGCTTAGCCCGCCTACGCATTCACCCGTCCAACAATCGAGACATCCGCATTCGCACTCGCAACATCACCAACATCAAGTGGCGCAAGGTAGTCCGTTGCATCTTCCGACAGCCTCGTCCGCTGTCGCCGCGCATCATTATTCATCCTCTTCCGTGCCAGGGTCGGAATTGTCGCCGGACGGCCATCCGGTCGCGGAGGATCAGGAAGACTGTAGAATACCCTCGGCGCCATCGGGTATTTCCACCAGACAGCAATTGATAAACAGTCCCTGTCCGATTTGCGGTGACAAGATAAGCGGATTTCATTACGGTATCTTCTCGTGCGAATCGTGCAAGGGATTCTTCAAGCGCACCGTCCAGAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGTCCGGTCACCGTGGCCACGAGGAAAAAATGTCCGGCCTGTCGCTTCGACAAGTGCCTCAACATGGGTATGAAGCTTGAGGCGATCAGGGAGGATCGTACCAGAGGCGGTAGAAGCACATATCAGTGCACCTATACCCTACCGGCGAATCTCGTCGGCAGTCCCGCCGGCGGAATGGGCGGCAGCGAAAAACTGACGGCGGCGGGCAATTGCAGTCCGGCACCGGCCGGAAGCGAGCACCATTATTCAGTCAGATATCATTCGAATCATTCTCACAAGCTGCAAGTGCCGCAACTCTTGCAAGACATTATGGACGTGGAGCATCTCTGGCATTATAACGACAATGATCGGGTAAGCGGGGGAATATCCGGGAATACGAGAAGCATCTCTATTAGCGGTGACAGCAATATGCTGCTCAGTGGATTCGGAAGTGGCGCATTGGCACCCGGTGGAACTGCGACTGTTATCGGCGCCGGAAATAACGGAGGCGCGGTGGAATGTTCGTCGAACGATTCGAGCAACGTCGATACTAACAACAGAAGAGGAGAGTCGGGTAGCCCCACCGGCTCGACTTCCACAGGGGCGTCCGATCAACATTCCACGAACGGCAATACCATAAATAATAGCAATTCTCAAATCGCCAGTAATTCCAATAATGGCAATCCGACGCAACATCCGGACTTTCTGTCTAATCTGTGCAACATCGCAGACCATCGACTTTATAAGATCGTCAAATGGTGCAAGAGTCTGCCATTATTCAAGAATATCTCAATCGATGATCAAATCTGTTTGTTGATCAACTCTTGGTGCGAGCTACTACTCTTCTCCTGTTGTTTTCGCAGCATGAACAGTCCCGGTGAGATCAGAGTGTCTCTCGGCAAGTCGATCACTCTAGAACAAGCTAGAGAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCGCTTTTACCAACAATCTGCGAAGACTGAGAGTAGACCAATACGAATATGTTGCTATGAAGgtGATCGTGCTGTTAACGTCCGACATAAGCGAATTAAAGGAACCTGAAAAGGTCAGAGCTTCTCAAGAAAAAGCCCTTCACGCATTGCAGCAATATACAATCGCGAAATATCCAGAAATGCCTGCCAAATTTGGTGAACTATTATTGAGAATACCAGATCTACAAAGAACGTGTCAAGCAGGAAAAGAATTGCTCAGTGCAAAACGTGAGGGAGAAGGCAGCTCCTTTAACCTATTAATGGAATTGTTGAGAGGAGATCACTGA
Protein Sequence
MSEQNGPSEGPGPGPGSDSGWWPTQTWKSSSSSSSATAAATSSSTSTSVAGCASISVSCATSSSSPTSSSTSTNTSATCCPLSCIGVSMSPSRSTETGKNVSVTTINVPPNQEMHDGKGVCKYLGGQNGVTVSVVSTSVLGCGNAVPTSGICTNTGPHSIGIGIGGILAANAADIDDPEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGDKIGDGDANGDGAGCCDDNSQRQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPAFTIGSFHDAGLPMTHNQQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPILNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQSRHPHSHSQHHQHQVAQGSPLHLPTASSAVAAHHYSSSSVPGSELSPDGHPVAEDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGGMGGSEKLTAAGNCSPAPAGSEHHYSVRYHSNHSHKLQVPQLLQDIMDVEHLWHYNDNDRVSGGISGNTRSISISGDSNMLLSGFGSGALAPGGTATVIGAGNNGGAVECSSNDSSNVDTNNRRGESGSPTGSTSTGASDQHSTNGNTINNSNSQIASNSNNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMNSPGEIRVSLGKSITLEQARELGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDISELKEPEKVRASQEKALHALQQYTIAKYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKREGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267641;
90% Identity
iTF_00885153;
80% Identity
iTF_00730082;