Tbic019874.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetramorium bicarinatum
Gene Symbol
Hr39
Assembly
GCA_011636605.1
Location
VBVP01003159.1:15017-20440[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 2.6 2.3e+04 -5.1 6.6 131 162 38 69 21 103 0.54
2 5 3 2.7e+04 -6.4 10.3 84 163 309 396 230 439 0.59
3 5 3 2.7e+04 -7.6 9.5 76 147 437 512 403 541 0.41
4 5 5.8e-08 0.00052 20.1 0.0 1 21 608 628 608 635 0.92
5 5 9.2e-71 8.2e-67 227.0 0.1 181 408 776 997 635 997 0.85

Sequence Information

Coding Sequence
ATGTCAGAGCAAAACGGGCCCAGCGAGGGCCCAGGGCCAGGGCCCGGCTCGGATTCGGGCTGGTGGCCAAACACGCAGACTTGGAAATCGTCGGCGGCCGCCTCGTCGTCGACCTCGTCGAATCCCGCTTCGGCGGCGGGTTCAGCATCCGTCTCTGTCTCTTGCTCCGCGTCCAGCTCATCCTCGACGAACTCTTCCACCTCGGCCAACTCATCCGCGACCTGTTGTCCCTCATCCTGCATCGGCGTCTCCTGCACAATGAGTCCAAGCCGCTCCACGGAAACGGGGAAAAACGTGTCCGTCACCACTATTAACGTACCGCCCAATCAAGAAATACACGATGGTAAAGGAGTATGTAAATATCTTGGGGGACAGAATGGTGTGACGGTGTCGGTCGTGTCGACCTCGGTACTGGGATGCGGAAACGCAAATGCCGTCCCGGCAAGCGGAATTTGCACGAATACGGGACCTCATAGTATCGGCATCGGAATCAGCGGCATCCTCGCCGCGAACGTGGCCGACATCGACGATCCCGAGGACAGCGACGGCGAGATCAGCAAGATTGACTTTAGAGGTGTCAATCTACGTTCGAAGAAGAAACGCGACGTATCGGGTAATCAGAATGGCGACAAAATCGGTGATGGAGATACAAACGGTGACGGTGGGGGATGCTGCGATGACAATTCGCAACAGCAACCAGAGAGGCCTATGTCATGGGAGGGTGAACTATCGGACCAAGAAATGTCTTCCAATACAATTACTAATCAGgACCATAATGAGGAAACGTCTATGGAGGGGGTTCAAGTATGCAGCACAAGCCCCGGACCCATGGAACAGAAGTTTCCTATTAAATCAGAGCCGGATTTTCGATCTAGCCCAGGTTTCACAATAGGATCCTTTCATGATGGTGGATTGCCCATGACACACAATCAACAActgcagcaacagcaacagcagcaacgcGGTATTGAAAACCTCGAACAGACTCAACAGAGCGACCTACCGCTTCTCGTAGGCAAGCTTCTCGGCGGATACAACAACTCGACACCTAATCACAGTCCTGTTCTCAATCCGCGACATCATCTAACTAAACACAGTCATACTAGATCACAGGTGCCGTCACCAGATTCCGCCATTCATTCTGCGTATAGCGTCTTCAGTTCACCGACACAGAGCCCTCACGCGGCACGACATTCCGCCCTAGGAGCGGGAAGTCCGATACCCTCCTCGTCGCTGTCCCTCTCTCGACACAGCTTCAACAATTCGACTTCCTCGTTATCCCTATCGTTATCGCATTCGCTTTCGAGGAACAATTCCGACGCTTCCAGTAGCTGCTACAGCTACGGCTCGCTTAGCCCGCCTACACATTCACCCGTCCAGCAGTCGAGACATCCGCATTCGCACTCGCAACATCATCAGCATCAAGTGGCGCAAGGTAGTCCGCTGCATCTACCAGCCTCATCCGCAGTCGCTGCACATCATTATTCCTCCTCTTCCGTACCAGGGGCGGAATTGTCGCCGGACGGCCATCCTGTCGCGGAGGATCAGGAAGACTGCAGGATACCCTCAGCGCCGTCGGGTATCTCCACCAGGCAACAATTGATAAACAGTCCCTGCCCGATTTGCGGCGACAAGATAAGCGGCTTCCATTACGGCATCTTCTCGTGTGAATCGTGCAAGGGATTCTTCAAGCGCACCGTCCAGAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGCCCGGTCACCGTGGCCACGAGGAAGAAGTGCCCGGCCTGCCGCTTCGACAAGTGCCTCAACATGGGTATGAAACTCGAGGCGATCAGGGAGGATCGTACCAGAGGCGGTAGAAGCACTTATCAATGTACCTACACCCTACCGGCAAATCTCGTTGGTAGTCCTGCCGGTGGTATGACCGGTGAGAAATTGACGACGGCGGGCAATTGCAGCCCGGCACCGGCCGGTAGCGAGCACCATTATTCCGTTAGATATCATTCGAATCATTCTCACAAGATGCAAGTGGTACCTCAACTATTGCAAGACATCATGGATGTGGAACATCTTTGGCATTACAACGATAACGATCGGATGAGCGGTAGTGGTGGGGTACTCGGAAGTGCAAGGAACAACAGTGGTGACAGTATGCTACTCGGTGGATCCGGAAGTGGTCTGACGCCCAGCGGTACTGTAACCACGACCGGAAACAACGGAGGTGCAGTGGAATGTTCGTCTAATGACTCTAGCAATGTCGATACTAATAGTAGAAGAGGAGAAACGGCGAGTCCTGCCGGCTCGACTTCAACGGGGGCGTCTGATCAACATTCCACAAACGGCAATATCACCAACAATAGTAATTCCCAAATCACCAGTAATTCCAATGGCAATTCGGCGCAGCATCCGGACTTTCTATCTAATCTGTGCAACATTGCGGATCATCGGCTTTACAAGATCGTCAAGTGGTGCAAGAGTCTGccgttatttaaaaatatctcgatcGACGATCAAATCTGTTTGTTGATCAACTCTTGGTGCGAGCTATTACTTTTCTCTTGCTGTTTTCGCAGCATGAGTACTCCCGGTGAGATAAGAGTGTCTCTTGGCAAGTCGATTACTCTAGAACAAGCAAGGCAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCGCTTTTACCAACAATCTGCGAAGACTGAGAGTAGACCAATACGAATACGTTGCAATGAAGGTGATCGTGCTGTTAACGTCTGATACAAGCGAATTAAAGGAGCCTGAGAAGGTCAGAGCTTCTCAGGAAAAAGCCCTTCAAGCACTGCAGCAATATACAATCGCGAGGTATCCAGAAATGCCTGCCAAATTCGGTGAACTATTGTTGAGAATTCCGGATCTGCAAAGAACATGTCAAGCAGGAAAAGAATTGCTCAGTGCAAAACGCGCCGAGGGAGAAGGCAGCTCGTTTAACCTTTTAATGGAATTGTTGAGAGGAGATCATTGA
Protein Sequence
MSEQNGPSEGPGPGPGSDSGWWPNTQTWKSSAAASSSTSSNPASAAGSASVSVSCSASSSSSTNSSTSANSSATCCPSSCIGVSCTMSPSRSTETGKNVSVTTINVPPNQEIHDGKGVCKYLGGQNGVTVSVVSTSVLGCGNANAVPASGICTNTGPHSIGIGISGILAANVADIDDPEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGDKIGDGDTNGDGGGCCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPGFTIGSFHDGGLPMTHNQQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQSRHPHSHSQHHQHQVAQGSPLHLPASSAVAAHHYSSSSVPGAELSPDGHPVAEDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGGMTGEKLTTAGNCSPAPAGSEHHYSVRYHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMSGSGGVLGSARNNSGDSMLLGGSGSGLTPSGTVTTTGNNGGAVECSSNDSSNVDTNSRRGETASPAGSTSTGASDQHSTNGNITNNSNSQITSNSNGNSAQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267641;
90% Identity
iTF_00885153;
80% Identity
iTF_01421627;