Fsel020253.1
Basic Information
- Insect
- Formica selysi
- Gene Symbol
- Hr39
- Assembly
- GCA_009859135.1
- Location
- CM020808.1:9829479-9835056[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.29 9.4e+03 -3.5 7.6 98 170 41 109 8 112 0.58 2 5 0.067 2.1e+03 -1.4 5.9 52 164 285 397 274 409 0.62 3 5 1 3.2e+04 -12.2 18.4 35 155 380 504 369 540 0.57 4 5 2e-08 0.00064 20.1 0.0 1 21 608 628 608 633 0.92 5 5 6.7e-69 2.1e-64 219.2 0.0 192 408 791 1001 748 1001 0.92
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCAGGACCAGGGCCCGGTTCGGATTCAGGCTGGTGGCCTACCCAGACCTGGAAatcatcgtcgtcatcgtcatcggcgacggcggcggcgaccTCATCGTCAACTTCCACTTCAGTGGCAGGTTGCGCGTCCATTTCGGTTTCCTGCGCTACGTCCAGCTCGTCACCGACGAGCTCCTCCACCTCGACCAACACGTCCGCGACCTGTTGCCCCCTGTCTTGTATCGGGGTATCGATGAGTCCGAGTCGTTCCACGGAGACGGGGAAAAACGTGTCCGTTACCACTATTAACGTACCGCCCAATCAAGAGATGCACgatggTAAAGGAGTGTGTAAATATCTCGGTGGACAGAACGGCGTGACGGTGTCGGTGGTATCGACCTCGGTGCTGGGATGCGGAAACGCCGTCCCGACGAGCGGAATCTGCACGAATACGGGGCCGCATAGTATCGGCATCGGAATTGGCGGTATCCTCGCCGCGAACGCGGCCGACATCGACGATCCCGAGGATAGCGACGGCGAGATCAGCAAGATTGACTTTAGAGGCGTCAATCTACGCTCGAAAAAGAAACGCGACGTATCGGGTAACCAGAATGGTGACAAGATCGGCGATGGGGATGCAAATGGCGACGGCGCGGGATGCTGTGACGATAATTCGCAACGGCAGCCCGAGAGACCAATGTCTTGGGAGGGAGAATTATCGGACCAAGAAATGTCTTCCAATACAATTACTAATCAGGACCATAACGAGGAAACGTCCATGGAGGGAGTTCAGGTGTGCAGTACGAGTCCTGGACCCATGGAACAGAAATTTCCGATTAAGTCAGAACCGGATTTTCGATCCAGTCCGGCTTTCACAATAGGATCCTTTCACGACGCCGGACTACCCATGACTCATAATCAACAACTgcaacagcagcaacagcaacaaCGCGGTATCGAAAATCTCGAGCAGACTCAACAAAGCGACCTACCGCTTCTCGTGGGCAAGCTTCTCGGCGGATATAACAATTCCACGCCTAATCATAGCCCTATTCTCAATCCGCGACATCATCTAACCAAGCACAGTCATACTAGATCGCAGGTGCCGTCACCAGATTCCGCCATTCATTCCGCATACAGCGTCTTCAGTTCACCGACGCAAAGCCCTCATGCAGCACGGCATTCCGCCTTAGCGGGCAGTCCGATACCGTCCTCATCGTTATCCCTCTCTCGGCACAGCTTCAACAATTCGACCTCCTCACTATCCCTGTCGCTGTCGCATTCGCTTTCGAGGAACAACTCGGACGCTTCCAGTAGCTGTTACAGTTACGGCTCGCTTAGCCCGCCTACGCATTCACCCGTCCAACAATCGAGACATCCGCATTCGCACTCGCAACATCACCAACATCAAGTGGCGCAAAGTAGTCCGTTGCATCTTCCGACAGCCTCGTCCGCTGTCGCCGCGCATCATTATTCATCCTCTTCCGTGCCAGGGTCGGAATTGTCGCCGGACGGCCATCCGGTCGCGGAGGATCAGGAAGACTGTAGAATACCCTCGGCGCCATCGGGTATTTCCACCAGACAGCAATTGATAAACAGTCCCTGTCCGATTTGCGGTGACAAGATAAGCGGATTTCATTACGGTATCTTCTCGTGCGAGTCGTGCAAGGGATTCTTCAAGCGCACCGTCCAGAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGTCCGGTCACCGTGGCCACGAGGAAAAAATGTCCGGCCTGTCGCTTTGACAAGTGCCTCAACATGGGTATGAAGCTTGAGGCGATCAGGGAGGATCGTACCAGAGGCGGTAGAAGCACATATCAGTGCACCTATACCCTACCGGCGAATCTCGTCGGCAGTCCCGCCGGCGGTATGGGCGGCAGCGAAAAACTGACGGCGGCGGGCAATTGCAGTCCGGCACCGGCCGGAAGCGAGCACCATTATTCAGTCAGATATCATTCGAATCATTCTCACAAGCTGCAAGTGCCGCAACTCTTGCAAGACATTATGGATGTGGAACATCTCTGGCATTATAACGACAATGATCGGGTAAGCGGGGGAATATCCGGGAATACGAGAAGCATCTCTATTAGCGGTGACAGCAATATGCTGCTCGGTGGATTCGGAAGTGGCGCATCGGCACCCGGTGGAACTGCGACTGTTATCGGCGCCGGAAATAACGGAGGCGCGGTGGAATGTTCGTCGAACGATTCGAGCAACGTCGATACCAACAACAGAAGAGGAGAGTCGGGTAGCCCCACCGGCTCGACTTCCACAGGGGCGTCCGATCAACATTCCACGAACGGCAATACCGTAAATAATAGCAATTCTCAAATCGCCAGTAATTCCAATAATGGCAATCCGACGCAACATCCGGACTTTTTGTCTAATCTGTGCAACATCGCAGACCATCGACTTTATAAGATCGTCAAATGGTGCAAGAGTCTGCCGTTATTCAAGAATATCTCAATCGATGATCAAATCTGTTTGTTGATCAACTCTTGGTGCGAGCTACTACTCTTCTCCTGTTGTTTTCGCAGCATGAACAGTCCCGGTGAGATCAGAGTGTCTCTCGGCAAGTCGATCACTTTAGAACAAGCTAGAGAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCGCTTTTACCAACAATCTGCGAAGACTGAGAGTAGACCAATACGAATATGTTGCTATGAAGgtGATCGTGCTGTTAACGTCCGACATAAGCGAATTAAAGGAACCTGAAAAGGTCAGAGCTTCTCAAGAAAAAGCCCTTCACGCATTGCAGCAATATACAATCGCGAAATATCCAGAAATGCCTGCCAAATTTGGTGAACTATTATTGAGAATACCAGATCTACAAAGAACGTGTCAAGCAGGAAAAGAATTGCTCAGTGCAAAACGTGAGGGAGAAGGCAGCTCCTTTAACCTTTTAATGGAATTGTTGAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGSDSGWWPTQTWKSSSSSSSATAAATSSSTSTSVAGCASISVSCATSSSSPTSSSTSTNTSATCCPLSCIGVSMSPSRSTETGKNVSVTTINVPPNQEMHDGKGVCKYLGGQNGVTVSVVSTSVLGCGNAVPTSGICTNTGPHSIGIGIGGILAANAADIDDPEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGDKIGDGDANGDGAGCCDDNSQRQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPAFTIGSFHDAGLPMTHNQQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPILNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQSRHPHSHSQHHQHQVAQSSPLHLPTASSAVAAHHYSSSSVPGSELSPDGHPVAEDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGGMGGSEKLTAAGNCSPAPAGSEHHYSVRYHSNHSHKLQVPQLLQDIMDVEHLWHYNDNDRVSGGISGNTRSISISGDSNMLLGGFGSGASAPGGTATVIGAGNNGGAVECSSNDSSNVDTNNRRGESGSPTGSTSTGASDQHSTNGNTVNNSNSQIASNSNNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMNSPGEIRVSLGKSITLEQARELGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDISELKEPEKVRASQEKALHALQQYTIAKYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKREGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267641;
- 90% Identity
- iTF_00885153;
- 80% Identity
- iTF_00730847;